View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17413_high_12 (Length: 374)
Name: NF17413_high_12
Description: NF17413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17413_high_12 |
 | |
|
| [»] scaffold0063 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 26524395 - 26524464
Alignment:
| Q |
15 |
aatacattctaaagcataataaatataaaatgcatgaaatgatataaatatgtatgcaatgaaatttttc |
84 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||| |
|
|
| T |
26524395 |
aatacattctaaagcataataaatataaaatgcatgaaatgatataagtatgtatgcaatgcaatatttc |
26524464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 39 - 75
Target Start/End: Original strand, 26455463 - 26455499
Alignment:
| Q |
39 |
ataaaatgcatgaaatgatataaatatgtatgcaatg |
75 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26455463 |
ataaaatgcatgaaatgatataaatatgtatgcaatg |
26455499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0063 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0063
Description:
Target: scaffold0063; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 15 - 74
Target Start/End: Complemental strand, 32083 - 32024
Alignment:
| Q |
15 |
aatacattctaaagcataataaatataaaatgcatgaaatgatataaatatgtatgcaat |
74 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
32083 |
aatacattctaaagcataataaatataaaatgcttgaaatgatataaatatgtatgcaat |
32024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University