View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17413_high_20 (Length: 250)

Name: NF17413_high_20
Description: NF17413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17413_high_20
NF17413_high_20
[»] chr8 (28 HSPs)
chr8 (1-240)||(19172498-19172737)
chr8 (4-240)||(19287912-19288145)
chr8 (5-239)||(19376819-19377056)
chr8 (132-239)||(19503747-19503854)
chr8 (1-82)||(19410966-19411047)
chr8 (1-82)||(19457985-19458066)
chr8 (1-82)||(19523012-19523093)
chr8 (132-239)||(19345489-19345596)
chr8 (1-82)||(19404943-19405024)
chr8 (2-78)||(19337691-19337767)
chr8 (2-78)||(19355711-19355787)
chr8 (1-82)||(19468432-19468513)
chr8 (1-82)||(19555353-19555434)
chr8 (132-239)||(19390944-19391051)
chr8 (4-81)||(19390790-19390867)
chr8 (18-82)||(19469380-19469444)
chr8 (18-82)||(19540304-19540368)
chr8 (1-56)||(19345355-19345410)
chr8 (1-56)||(19503933-19503988)
chr8 (18-78)||(19592330-19592390)
chr8 (132-231)||(19592447-19592546)
chr8 (132-231)||(19469228-19469327)
chr8 (132-231)||(19540152-19540251)
chr8 (184-239)||(19450665-19450720)
chr8 (184-239)||(19530356-19530411)
chr8 (134-231)||(19411102-19411199)
chr8 (132-204)||(19355844-19355916)
chr8 (132-239)||(19405077-19405184)
[»] chr1 (2 HSPs)
chr1 (5-78)||(36314490-36314563)
chr1 (139-239)||(36314320-36314420)
[»] chr6 (1 HSPs)
chr6 (3-77)||(19543263-19543337)


Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 19172737 - 19172498
Alignment:
Q  1 tatgtgttatggatataatagcgatggagggtgccaaaaatgggaggatataccaacctgcagggaacccggtgaggtgtttnnnnnnntgacaggcaga 100  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||    
T  19172737 tatgtgttatggctataataccgatggagggtgccaaaaatgggaggatataccaacctgcagggaacccggtgaggtgtttaaaaaaatgacaggcaga 19172638  T
Q  101 cccaacaccgacagtgcaaccatccaagacaatgtgacttatggttacagtgattgtaagatcagttgttggagaaactgtgactgcaatgggttccaag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  19172637 cccaacaccgacagtgcaaccatccaagacaatgtgacttatggttacagtgattgtaagatcagttgttggagaaactgtgaatgcaatgggttccaag 19172538  T
Q  201 aattttatcgtaatgggactggatgtatattttattcatc 240  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  19172537 aattttatcgtaatgggactggatgtatattttattcatc 19172498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 4 - 240
Target Start/End: Original strand, 19287912 - 19288145
Alignment:
Q  4 gtgttatggatataatagcgatggagggtgccaaaaatgggaggatataccaacctgcagggaacccggtgaggtgtttnnnnnnntgacaggcagaccc 103  Q
    |||||||||||||||||  |||| |||||||||||||||||||||||| ||||| ||||||||||  |||||||| |||        |||||||||||||    
T  19287912 gtgttatggatataataatgatgaagggtgccaaaaatgggaggatatgccaacttgcagggaacgtggtgaggtctttcaaaaaaagacaggcagaccc 19288011  T
Q  104 aacaccgacagtgcaaccatccaagacaatgtgacttatggttacagtgattgtaagatcagttgttggagaaactgtgactgcaatgggttccaagaat 203  Q
    ||||||   || | |||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  19288012 aacacc---agggaaaccatccaagacaatgtgacttatggttatagtgactgtaagctcagttgttggagaaactgtgactgcaatgggttccaagaat 19288108  T
Q  204 tttatcgtaatgggactggatgtatattttattcatc 240  Q
    |||||||||||||||||||||||||||||||||||||    
T  19288109 tttatcgtaatgggactggatgtatattttattcatc 19288145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 5 - 239
Target Start/End: Original strand, 19376819 - 19377056
Alignment:
Q  5 tgttatggatataatagcgatggagggtgccaaaaatgggaggatataccaacctgcagggaacccggtgaggtgtttnnnnnnntgacaggcagaccca 104  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||        ||| || ||||| |    
T  19376819 tgttatggatataatagtgatcgagggtgccaaaaatgggaggatataccagcttgcagggaacctggtgaggtgtttcaaagaaagactggaagaccaa 19376918  T
Q  105 acaccgacagtgca---accatccaagacaatgtgacttatggttacagtgattgtaagatcagttgttggagaaactgtgactgcaatgggttccaaga 201  Q
    |||  |||| ||||   |||||  || |  |||||||||||| |||||||||||| ||||| || ||||||||||| ||| | |||||||| ||||||||    
T  19376919 acatagacaatgcatcaaccattgaacaggatgtgacttatgtttacagtgattgcaagataagatgttggagaaattgtaattgcaatggattccaaga 19377018  T
Q  202 attttatcgtaatgggactggatgtatattttattcat 239  Q
    ||||||||| |||||||||||||||||||| |||||||    
T  19377019 attttatcgcaatgggactggatgtatattctattcat 19377056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 132 - 239
Target Start/End: Complemental strand, 19503854 - 19503747
Alignment:
Q  132 atgtgacttatggttacagtgattgtaagatcagttgttggagaaactgtgactgcaatgggttccaagaattttatcgtaatgggactggatgtatatt 231  Q
    ||||||||||| ||||||||||||| ||||| || ||||||||||| ||| | |||||||| ||||| ||||||||| ||||||||||||||||||||||    
T  19503854 atgtgacttatagttacagtgattgcaagattagatgttggagaaattgtaattgcaatggattccaggaattttatggtaatgggactggatgtatatt 19503755  T
Q  232 ttattcat 239  Q
     |||||||    
T  19503754 ctattcat 19503747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 19410966 - 19411047
Alignment:
Q  1 tatgtgttatggatataatagcgatggagggtgccaaaaatgggaggatataccaacctgcagggaacccggtgaggtgttt 82  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||    
T  19410966 tatgtgttacggatataatagtgatggagggtgccaaaaatgggaggatataccaacttgcagggaacctggtgagatgttt 19411047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 19457985 - 19458066
Alignment:
Q  1 tatgtgttatggatataatagcgatggagggtgccaaaaatgggaggatataccaacctgcagggaacccggtgaggtgttt 82  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||    
T  19457985 tatgtgttacggatataatagtgatggagggtgccaaaaatgggaggatataccaacttgcagggaacctggtgagatgttt 19458066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 19523093 - 19523012
Alignment:
Q  1 tatgtgttatggatataatagcgatggagggtgccaaaaatgggaggatataccaacctgcagggaacccggtgaggtgttt 82  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||    
T  19523093 tatgtgttacggatataatagtgatggagggtgccaaaaatgggaggatataccaacttgcagggaacctggtgagatgttt 19523012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 132 - 239
Target Start/End: Original strand, 19345489 - 19345596
Alignment:
Q  132 atgtgacttatggttacagtgattgtaagatcagttgttggagaaactgtgactgcaatgggttccaagaattttatcgtaatgggactggatgtatatt 231  Q
    ||||||||||| ||||||||||||| ||||| || ||||||||||| ||| | |||||||| ||||| ||||||||| |||||||||||||||||| |||    
T  19345489 atgtgacttatagttacagtgattgcaagattagatgttggagaaattgttattgcaatggattccaggaattttatggtaatgggactggatgtacatt 19345588  T
Q  232 ttattcat 239  Q
     |||||||    
T  19345589 ctattcat 19345596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 19404943 - 19405024
Alignment:
Q  1 tatgtgttatggatataatagcgatggagggtgccaaaaatgggaggatataccaacctgcagggaacccggtgaggtgttt 82  Q
    ||||||||||||||||||||| || |||||||||||||| ||||||||||||||||| || |||||||| ||||||||||||    
T  19404943 tatgtgttatggatataatagggacggagggtgccaaaagtgggaggatataccaacttgtagggaacctggtgaggtgttt 19405024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 2 - 78
Target Start/End: Original strand, 19337691 - 19337767
Alignment:
Q  2 atgtgttatggatataatagcgatggagggtgccaaaaatgggaggatataccaacctgcagggaacccggtgaggt 78  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||  || |||||||| ||||||||    
T  19337691 atgtgttatggatataatagcgatggagggtgccaaaaatgggaggaaataccaaattgtagggaacctggtgaggt 19337767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 2 - 78
Target Start/End: Original strand, 19355711 - 19355787
Alignment:
Q  2 atgtgttatggatataatagcgatggagggtgccaaaaatgggaggatataccaacctgcagggaacccggtgaggt 78  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||  || |||||||| ||||||||    
T  19355711 atgtgttatggatataatagcgatggagggtgccaaaaatgggaggaaataccaaattgtagggaacctggtgaggt 19355787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 19468513 - 19468432
Alignment:
Q  1 tatgtgttatggatataatagcgatggagggtgccaaaaatgggaggatataccaacctgcagggaacccggtgaggtgttt 82  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| || |||| ||| ||||||| ||||    
T  19468513 tatgtgttatggatataatagtgatggaggatgccaaaaatgggaggatataccaacttgtagggcacctggtgaggggttt 19468432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 19555434 - 19555353
Alignment:
Q  1 tatgtgttatggatataatagcgatggagggtgccaaaaatgggaggatataccaacctgcagggaacccggtgaggtgttt 82  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| || |||| ||| ||||||| ||||    
T  19555434 tatgtgttatggatataatagtgatggaggatgccaaaaatgggaggatataccaacttgtagggcacctggtgaggggttt 19555353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 132 - 239
Target Start/End: Original strand, 19390944 - 19391051
Alignment:
Q  132 atgtgacttatggttacagtgattgtaagatcagttgttggagaaactgtgactgcaatgggttccaagaattttatcgtaatgggactggatgtatatt 231  Q
    ||||||||||| ||||||||||||| ||||| || ||||||| ||| |||   |||||||| ||||||||||| |||  |||||||||||||||||||||    
T  19390944 atgtgacttatagttacagtgattgcaagatgagatgttggaaaaattgtagttgcaatggattccaagaattgtatgataatgggactggatgtatatt 19391043  T
Q  232 ttattcat 239  Q
     |||||||    
T  19391044 ctattcat 19391051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 4 - 81
Target Start/End: Original strand, 19390790 - 19390867
Alignment:
Q  4 gtgttatggatataatagcgatggagggtgccaaaaatgggaggatataccaacctgcagggaacccggtgaggtgtt 81  Q
    |||||||||||||||||| ||||  ||||||||||||||||||||||||||||| |||||||| ||  ||||||||||    
T  19390790 gtgttatggatataatagtgatgccgggtgccaaaaatgggaggatataccaacttgcagggaccctcgtgaggtgtt 19390867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 19469444 - 19469380
Alignment:
Q  18 atagcgatggagggtgccaaaaatgggaggatataccaacctgcagggaacccggtgaggtgttt 82  Q
    |||| |||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  19469444 atagtgatggaggatgccaaaaatgggaggatataccaacttgcagggaacctggtgaggtgttt 19469380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 19540368 - 19540304
Alignment:
Q  18 atagcgatggagggtgccaaaaatgggaggatataccaacctgcagggaacccggtgaggtgttt 82  Q
    |||| |||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  19540368 atagtgatggaggatgccaaaaatgggaggatataccaacttgcagggaacctggtgaggtgttt 19540304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 19345355 - 19345410
Alignment:
Q  1 tatgtgttatggatataatagcgatggagggtgccaaaaatgggaggatataccaa 56  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  19345355 tatgtgttatggatataatagcaatggagggtgccaaaaatgggaggaaataccaa 19345410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 19503988 - 19503933
Alignment:
Q  1 tatgtgttatggatataatagcgatggagggtgccaaaaatgggaggatataccaa 56  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  19503988 tatgtgttatggatataatagcaatggagggtgccaaaaatgggaggaaataccaa 19503933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 19592330 - 19592390
Alignment:
Q  18 atagcgatggagggtgccaaaaatgggaggatataccaacctgcagggaacccggtgaggt 78  Q
    |||| |||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||    
T  19592330 atagtgatggaggatgccaaaaatgggaggatataccaacttgcagggaacctggtgaggt 19592390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 132 - 231
Target Start/End: Original strand, 19592447 - 19592546
Alignment:
Q  132 atgtgacttatggttacagtgattgtaagatcagttgttggagaaactgtgactgcaatgggttccaagaattttatcgtaatgggactggatgtatatt 231  Q
    ||||||||||| ||||||||||||| ||||| || ||||||||||| ||| | |||| ||  |||||||||| ||||  |||||||||||||||| ||||    
T  19592447 atgtgacttatagttacagtgattgcaagattagatgttggagaaattgtaattgcagtgcattccaagaatattatgataatgggactggatgtgtatt 19592546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 132 - 231
Target Start/End: Complemental strand, 19469327 - 19469228
Alignment:
Q  132 atgtgacttatggttacagtgattgtaagatcagttgttggagaaactgtgactgcaatgggttccaagaattttatcgtaatgggactggatgtatatt 231  Q
    ||||||||||| ||||||||||||| ||||| || ||||||| ||| ||| | |||| ||  |||||||||| ||||  |||||||||||||||| ||||    
T  19469327 atgtgacttatagttacagtgattgcaagatgagatgttggaaaaattgtaattgcagtgcattccaagaatattatgataatgggactggatgtgtatt 19469228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 132 - 231
Target Start/End: Complemental strand, 19540251 - 19540152
Alignment:
Q  132 atgtgacttatggttacagtgattgtaagatcagttgttggagaaactgtgactgcaatgggttccaagaattttatcgtaatgggactggatgtatatt 231  Q
    ||||||||||| ||||||||||||| ||||| || ||||||| ||| ||| | |||| ||  |||||||||| ||||  |||||||||||||||| ||||    
T  19540251 atgtgacttatagttacagtgattgcaagatgagatgttggaaaaattgtaattgcagtgcattccaagaatattatgataatgggactggatgtgtatt 19540152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 239
Target Start/End: Original strand, 19450665 - 19450720
Alignment:
Q  184 ctgcaatgggttccaagaattttatcgtaatgggactggatgtatattttattcat 239  Q
    ||||||||| ||||||||||| | | |||||||||||||||||||||| |||||||    
T  19450665 ctgcaatggattccaagaattatttagtaatgggactggatgtatattctattcat 19450720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 239
Target Start/End: Complemental strand, 19530411 - 19530356
Alignment:
Q  184 ctgcaatgggttccaagaattttatcgtaatgggactggatgtatattttattcat 239  Q
    ||||||||| ||||||||||| | | |||||||||||||||||||||| |||||||    
T  19530411 ctgcaatggattccaagaattatttagtaatgggactggatgtatattctattcat 19530356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 231
Target Start/End: Original strand, 19411102 - 19411199
Alignment:
Q  134 gtgacttatggttacagtgattgtaagatcagttgttggagaaactgtgactgcaatgggttccaagaattttatcgtaatgggactggatgtatatt 231  Q
    ||||||||| ||||||||||||| |||||||| ||||||| ||| |||   |||||||| ||||||  || |||| |||||  |||||||||| ||||    
T  19411102 gtgacttatagttacagtgattgcaagatcagatgttggaaaaattgtagttgcaatggattccaactatattatagtaatatgactggatgtgtatt 19411199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 204
Target Start/End: Original strand, 19355844 - 19355916
Alignment:
Q  132 atgtgacttatggttacagtgattgtaagatcagttgttggagaaactgtgactgcaatgggttccaagaatt 204  Q
    |||||| ||||||||| |||||||| ||||| || ||||||||||| ||| | ||| |||| |||||||||||    
T  19355844 atgtgaattatggttatagtgattgcaagatgagatgttggagaaattgtaattgctatggattccaagaatt 19355916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 239
Target Start/End: Original strand, 19405077 - 19405184
Alignment:
Q  132 atgtgacttatggttacagtgattgtaagatcagttgttggagaaactgtgactgcaatgggttccaagaattttatcgtaatgggactggatgtatatt 231  Q
    |||||| |||||||||||||||||| ||||| || ||||||||||| ||| | ||| |||| ||| ||||| | ||  |||||   |||||||||||||     
T  19405077 atgtgaattatggttacagtgattgcaagatgagatgttggagaaattgtaattgctatggattcgaagaactatacagtaattttactggatgtatata 19405176  T
Q  232 ttattcat 239  Q
     |||||||    
T  19405177 ctattcat 19405184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 5 - 78
Target Start/End: Complemental strand, 36314563 - 36314490
Alignment:
Q  5 tgttatggatataatagcgatggagggtgccaaaaatgggaggatataccaacctgcagggaacccggtgaggt 78  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||| || |||||||| ||||||||    
T  36314563 tgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggt 36314490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 239
Target Start/End: Complemental strand, 36314420 - 36314320
Alignment:
Q  139 ttatggttacagtgattgtaagatcagttgttggagaaactgtgactgcaatgggttccaagaattttatcgtaatgggactggatgtatattttattca 238  Q
    |||||||||||||||||| ||||| || ||||||||||| |||   |||||||| |||  |||||| |||  ||||  |||||||||| |||| ||||||    
T  36314420 ttatggttacagtgattgcaagatgagatgttggagaaattgtagttgcaatggattcgtagaattatatgataatttgactggatgtgtattctattca 36314321  T
Q  239 t 239  Q
    |    
T  36314320 t 36314320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 77
Target Start/End: Original strand, 19543263 - 19543337
Alignment:
Q  3 tgtgttatggatataatagcgatggagggtgccaaaaatgggaggatataccaacctgcagggaacccggtgagg 77  Q
    |||||||||||||||||| | | |||||||||||||||||||||||||||||||  || |||||||| |||||||    
T  19543263 tgtgttatggatataatatcaacggagggtgccaaaaatgggaggatataccaagttgtagggaacctggtgagg 19543337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University