View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17413_high_24 (Length: 236)

Name: NF17413_high_24
Description: NF17413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17413_high_24
NF17413_high_24
[»] chr8 (8 HSPs)
chr8 (1-220)||(4506085-4506304)
chr8 (51-209)||(15077109-15077267)
chr8 (69-209)||(15164894-15165034)
chr8 (54-220)||(15751574-15751740)
chr8 (47-155)||(13033891-13033999)
chr8 (53-141)||(15000653-15000741)
chr8 (47-147)||(15030197-15030297)
chr8 (47-147)||(15053025-15053125)
[»] chr7 (3 HSPs)
chr7 (47-156)||(1617755-1617864)
chr7 (47-220)||(1626305-1626478)
chr7 (47-102)||(1631266-1631321)
[»] chr3 (1 HSPs)
chr3 (47-161)||(3652462-3652576)


Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 4506085 - 4506304
Alignment:
Q  1 accatttgacaatagtgtgaaaggatcactttatgttgttgataggtccacttaacttttcttctatgattttggatagtttttcttccattgaaggaga 100  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  4506085 accatttgacaatagtgtgaaaggatcgctttatgttgttgataggtccacttaacttttcttctatgattttggatagtttttcttccattcaaggaga 4506184  T
Q  101 aagataatttatccaatctcctacttctgcctttctaaagaagaacttgttctcaaagttcagtccaacagatccagatttatttacctccaattccttc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  4506185 aagataatttatccaatctcctacttctgcctttctaaagaagaacttgttctcaaagtttagtccaacagatccagatttatttacctccaattccttc 4506284  T
Q  201 atcttttcagagccacataa 220  Q
    ||||||||| ||||||||||    
T  4506285 atcttttcaaagccacataa 4506304  T

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Target: chr8; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 51 - 209
Target Start/End: Complemental strand, 15077267 - 15077109
Alignment:
Q  51 cttaacttttcttctatgattttggatagtttttcttccattgaaggagaaagataatttatccaatctcctacttctgcctttctaaagaagaacttgt 150  Q
    ||||||||||| || |  |||||||| |||||||||||||||||||| ||||| |||||| |||||||| ||||||  ||||||| ||||||||| ||||    
T  15077267 cttaacttttcatccacaattttggacagtttttcttccattgaaggggaaaggtaatttttccaatcttctactttggcctttcgaaagaagaatttgt 15077168  T
Q  151 tctcaaagttcagtcc-aacagatccagatttatttacctccaattccttcatcttttca 209  Q
    |||||| | || | || |||||||||| |||||||||||||||||||||||||| |||||    
T  15077167 tctcaatg-tctgaccgaacagatccaaatttatttacctccaattccttcatcgtttca 15077109  T

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Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 69 - 209
Target Start/End: Original strand, 15164894 - 15165034
Alignment:
Q  69 attttggatagtttttcttccattgaaggagaaagataatttatccaatctcctacttctgcctttctaaagaagaacttgttctcaa-agttcagtcca 167  Q
    ||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||  ||||||| ||||||||| |||||| ||| |  | |   ||    
T  15164894 attttggatagtttttcttccattgaaggggaaaggtaatttttccaatctcctactttggcctttcgaaagaagaatttgttcccaacatatgaccgca 15164993  T
Q  168 acagatccagatttatttacctccaattccttcatcttttca 209  Q
      | |||||||||||||||||||||||||||||||| |||||    
T  15164994 tga-atccagatttatttacctccaattccttcatcgtttca 15165034  T

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Target: chr8; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 54 - 220
Target Start/End: Complemental strand, 15751740 - 15751574
Alignment:
Q  54 aacttttcttctatgattttggatagtttttcttccattgaaggagaaagataatttatccaatctcctacttctgcctttctaaagaagaacttgttct 153  Q
    ||||| ||||| ||||||||||||||||||||| |||||||||||||||| || || |||||||||||||| || |||||||  || ||| | || || |    
T  15751740 aacttctcttcaatgattttggatagtttttctaccattgaaggagaaaggtagttaatccaatctcctacctcagcctttcggaacaagtagttttttt 15751641  T
Q  154 caaagttcagtccaacagatccagatttatttacctccaattccttcatcttttcagagccacataa 220  Q
    |||  |||  |||||    |||| |||||||| ||||||||||||||||||||| | ||| ||||||    
T  15751640 caattttccttccaaactctccaaatttatttgcctccaattccttcatctttttaaagctacataa 15751574  T

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Target: chr8; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 47 - 155
Target Start/End: Complemental strand, 13033999 - 13033891
Alignment:
Q  47 tccacttaacttttcttctatgattttggatagtttttcttccattgaaggagaaagataatttatccaatctcctacttctgcctttctaaagaagaac 146  Q
    ||||||||| ||||||||||||| |||||||| | |||||  ||||||||||||||  ||||||| ||||||||||| |||| |||||| |||||| |||    
T  13033999 tccacttaatttttcttctatgactttggataatctttctatcattgaaggagaaaagtaatttacccaatctcctatttctccctttcgaaagaaaaac 13033900  T
Q  147 ttgttctca 155  Q
    || ||||||    
T  13033899 tttttctca 13033891  T

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Target: chr8; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 53 - 141
Target Start/End: Complemental strand, 15000741 - 15000653
Alignment:
Q  53 taacttttcttctatgattttggatagtttttcttccattgaaggagaaagataatttatccaatctcctacttctgcctttctaaaga 141  Q
    |||| |||||| | |||||||||||| ||||||| |||||||| | |||||||||||| |||||||||||| ||| ||||||| |||||    
T  15000741 taacatttcttttgtgattttggatattttttctaccattgaacgggaaagataatttttccaatctcctatttcggcctttcgaaaga 15000653  T

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Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 47 - 147
Target Start/End: Complemental strand, 15030297 - 15030197
Alignment:
Q  47 tccacttaacttttcttctatgattttggatagtttttcttccattgaaggagaaagataatttatccaatctcctacttctgcctttctaaagaagaac 146  Q
    ||||||||| ||||||| ||||| |||||||| |||||||  ||||||||| || |||||||| | |||||| || |  ||| ||||||||||||| |||    
T  15030297 tccacttaatttttcttttatgactttggataatttttctatcattgaaggggagagataattcacccaatcccccatctctccctttctaaagaaaaac 15030198  T
Q  147 t 147  Q
    |    
T  15030197 t 15030197  T

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Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 47 - 147
Target Start/End: Complemental strand, 15053125 - 15053025
Alignment:
Q  47 tccacttaacttttcttctatgattttggatagtttttcttccattgaaggagaaagataatttatccaatctcctacttctgcctttctaaagaagaac 146  Q
    |||||| || |||||||  ||||||||||||| | |||||  ||||||||||||||  ||||||| |||||| |||| |||| |||||| |||||| |||    
T  15053125 tccactgaatttttcttgcatgattttggataatctttctatcattgaaggagaaaagtaatttacccaatcccctatttctccctttcgaaagaaaaac 15053026  T
Q  147 t 147  Q
    |    
T  15053025 t 15053025  T

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Target: chr7 (Bit Score: 62; Significance: 6e-27; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 47 - 156
Target Start/End: Original strand, 1617755 - 1617864
Alignment:
Q  47 tccacttaacttttcttctatgattttggatagtttttcttccattgaaggagaaagataatttatccaatctcctacttctgcctttctaaagaagaac 146  Q
    ||||||||| |||||||||||||||||||| || || ||| |||||||||||||||||||||| |||||||| |||| ||||||||||| |||| || ||    
T  1617755 tccacttaatttttcttctatgattttggacagcttctctaccattgaaggagaaagataattaatccaatcccctatttctgcctttcgaaagtagtac 1617854  T
Q  147 ttgttctcaa 156  Q
    || |||||||    
T  1617855 tttttctcaa 1617864  T

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Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 47 - 220
Target Start/End: Original strand, 1626305 - 1626478
Alignment:
Q  47 tccacttaacttttcttctatgattttggatagtttttcttccattgaaggagaaagataatttatccaatctcctacttctgcctttctaaagaagaac 146  Q
    ||||||||| ||||||||||||||||||||||  || ||| |||||||||||||||||||||| |||||||| |||| |||| |||||| ||||||| ||    
T  1626305 tccacttaatttttcttctatgattttggataacttatctaccattgaaggagaaagataattaatccaatcccctatttctccctttcgaaagaagtac 1626404  T
Q  147 ttgttctcaaagttcagtccaacaga-tccagatttatttacctccaattccttcatcttttcagagccacataa 220  Q
    || || ||| |  ||  ||| | ||| ||||||||||||| | |||||| | |||||||||||| ||| ||||||    
T  1626405 tttttgtcataaatctttccca-agactccagatttatttgcttccaatcctttcatcttttcaaagctacataa 1626478  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 102
Target Start/End: Original strand, 1631266 - 1631321
Alignment:
Q  47 tccacttaacttttcttctatgattttggatagtttttcttccattgaaggagaaa 102  Q
    ||||||||| ||||||||||||||||||||||  |||||| ||||||||| |||||    
T  1631266 tccacttaatttttcttctatgattttggataacttttctaccattgaagaagaaa 1631321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 47 - 161
Target Start/End: Original strand, 3652462 - 3652576
Alignment:
Q  47 tccacttaacttttcttctatgattttggatagtttttcttccattgaaggagaaagataatttatccaatctcctacttctgcctttctaaagaagaac 146  Q
    ||||| |||||| ||||| ||||  ||||| | ||||||  |||||||||| |||||||||||  ||||||| || |||||  | |||||||| ||||||    
T  3652462 tccacctaacttctcttcaatgaccttggacaatttttcaaccattgaaggtgaaagataattactccaatcaccaacttcaccttttctaaacaagaac 3652561  T
Q  147 ttgttctcaaagttc 161  Q
    || ||||||||||||    
T  3652562 ttattctcaaagttc 3652576  T

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