View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17413_high_26 (Length: 223)
Name: NF17413_high_26
Description: NF17413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17413_high_26 |
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Alignment Details
Target: chr4 (Bit Score: 144; Significance: 7e-76; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 43901316 - 43901107
Alignment:
| Q |
1 |
caaatccatgtattgtgacagtgggatttctacctatgtttcttcctcttgtacttcagcttgcatnnnnnnnnnnnnntgcatgtgaataaaacttgca |
100 |
Q |
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| T |
43901316 |
caaatccatgtattgtgacagtgggatttctacctatgtttcttcctcttgtacttcagcttgcatgaaaaaataaaa-tgcatgtgaataaaacttgca |
43901218 |
T |
|
| Q |
101 |
ttcttgtattctcccagaaaaaattattccttcctatgaataaatctagtaaacttaaaacaaacatctcttgtgtgaaatcgacaaatatataaacatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |
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| T |
43901217 |
ttcttgtattctcccagaaaaaattattccttcctatgaataaatctagtaaacttaaaacaaacatctcttgtatgaaatc-------atataaacatg |
43901125 |
T |
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| Q |
201 |
gttactggttagtatatt |
218 |
Q |
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|||||||||||||||||| |
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| T |
43901124 |
gttactggttagtatatt |
43901107 |
T |
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