View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17413_high_5 (Length: 523)

Name: NF17413_high_5
Description: NF17413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17413_high_5
NF17413_high_5
[»] chr5 (3 HSPs)
chr5 (1-506)||(9576168-9576663)
chr5 (280-431)||(42638099-42638250)
chr5 (277-395)||(42630454-42630572)
[»] chr8 (1 HSPs)
chr8 (243-428)||(3368617-3368799)
[»] chr1 (5 HSPs)
chr1 (282-428)||(34287584-34287730)
chr1 (277-372)||(19226212-19226307)
chr1 (280-374)||(361020-361114)
chr1 (327-372)||(19220747-19220792)
chr1 (309-373)||(40399722-40399786)
[»] scaffold0129 (1 HSPs)
scaffold0129 (285-374)||(9590-9679)
[»] chr6 (2 HSPs)
chr6 (282-374)||(287458-287550)
chr6 (288-371)||(21379306-21379389)
[»] chr7 (1 HSPs)
chr7 (327-372)||(25627371-25627416)
[»] chr2 (1 HSPs)
chr2 (282-374)||(16920093-16920185)


Alignment Details
Target: chr5 (Bit Score: 423; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 1 - 506
Target Start/End: Complemental strand, 9576663 - 9576168
Alignment:
Q  1 ctgtaaccaaaagttaggtctaacgatcgcatggtgccatgggagcggaaaaatcagtttaggtttataaattaaacctaataattttgtttctacaaat 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9576663 ctgtaaccaaaagttaggtctaatgatcgcatggtgccatgggagcggaaaaatcagtttaggtttataaattaaacctaataattttgtttctacaaat 9576564  T
Q  101 ccaataatccaattactgcaaaaaagtttttccacagagataacgcttaacaggctttctcaggcttctctcaactcgttccgcttgtctttagagtcaa 200  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||    
T  9576563 ccaataatccaattgctgcaaaaaagtttttccacagagataacgcttaacaggctt----------ctctcaactcgttccgcttgtctttagagtcaa 9576474  T
Q  201 gtgtagtgatcaacggatgcagcaaatgaaaaggttagtaataatcacatacatgatgatgttgcctaatttgtcgttttgtcaaaattacctctcaaat 300  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  9576473 gtgtagtgatcaatggatgcagcaaatgaaaaggttagtaataatcacatacatgatgatgttgcctaatttgtcgttttgtcaaaattacctttcaaat 9576374  T
Q  301 ctttgattcgattttgctgtgtacaaaaatcatggactctcttgtttgaaaacccttatttcatgagcatgtataggaggaatttcttatacaaggatca 400  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  9576373 ctttgattcgattttgctgtgtacaaaaattatggactctcttgtttgaaaacccttatttcatgagcatgtttaggaggaatttcttatacaaggatca 9576274  T
Q  401 ttcttgttataatgatacatctttcctcctatatctttcgtttggtgtcaagggtatgtttcaacctacattgtattctctttctggtgggaggttaggg 500  Q
    ||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||    
T  9576273 ttcttattacaatgatacatctttcctcctatatcattcgtttggtgtcaagggtatgtttcaacctacattgtattctcttcctggtgggaggtttggg 9576174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 280 - 431
Target Start/End: Complemental strand, 42638250 - 42638099
Alignment:
Q  280 tgtcaaaattacctctcaaatctttgattcgattttgctgtgtacaaaaatcatggactctcttgtttgaaaacccttatttcatgagcatgtataggag 379  Q
    ||||||| || ||||| ||||| |||| ||||||| | ||||| |  ||||| ||| || ||||||| || || |||||||||| || ||||| | | ||    
T  42638250 tgtcaaagttgcctcttaaatccttgactcgatttggttgtgtgcgtaaatcttggtctttcttgttagataatccttatttcaagaccatgtttcgaag 42638151  T
Q  380 gaatttcttatacaaggatcattcttgttataatgatacatctttcctccta 431  Q
     ||||||||||| ||| ||||||||| ||| |||||||||||| || |||||    
T  42638150 aaatttcttatataagaatcattcttattacaatgatacatctctcttccta 42638099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 277 - 395
Target Start/End: Complemental strand, 42630572 - 42630454
Alignment:
Q  277 ttttgtcaaaattacctctcaaatctttgattcgattttgctgtgtacaaaaatcatggactctcttgtttgaaaacccttatttcatgagcatgtatag 376  Q
    ||||||||||| | ||||| ||||||||| |||||||| | ||||| |  ||||||||| |||| |||||| ||||  |||||||||||| ||||| | |    
T  42630572 ttttgtcaaaacttcctcttaaatctttgtttcgatttggttgtgtgcgtaaatcatggtctcttttgtttaaaaattcttatttcatgaacatgtttcg 42630473  T
Q  377 gaggaatttcttatacaag 395  Q
     | ||||||||||| ||||    
T  42630472 aaagaatttcttatccaag 42630454  T

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Target: chr8 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 243 - 428
Target Start/End: Complemental strand, 3368799 - 3368617
Alignment:
Q  243 aatcacatacatgatgatgttgcctaatttgtcgttttgtcaaaattacctctcaaatctttgattcgattttgctgtgtacaaaaatcatggactctct 342  Q
    ||||||||| ||||||| |||||||   | ||| || |||| ||||||||||||||||||||| |||||||| | ||||| |  ||||||||| ||||||    
T  3368799 aatcacatatatgatgacgttgcct---tcgtcattctgtctaaattacctctcaaatctttgtttcgatttcgttgtgtgcgtaaatcatggtctctct 3368703  T
Q  343 tgtttgaaaacccttatttcatgagcatgtataggaggaatttcttatacaaggatcattcttgttataatgatacatctttcctc 428  Q
    | |||||||||||||||||||||  |||||   | || | ||| ||||  ||| ||||||||| ||| |||||||||||| |||||    
T  3368702 tatttgaaaacccttatttcatggacatgttccgaagaatttttttatctaagaatcattcttattacaatgatacatctctcctc 3368617  T

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Target: chr1 (Bit Score: 51; Significance: 5e-20; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 282 - 428
Target Start/End: Original strand, 34287584 - 34287730
Alignment:
Q  282 tcaaaattacctctcaaatctttgattcgattttgctgtgtacaaaaatcatggactctcttgtttgaaaacccttatttcatgagcatgtataggagga 381  Q
    ||||||||||||||||||||| |  |||||||||| ||  |||  ||||||||| |||  ||||||||||||||||||||||||| ||| | | | || |    
T  34287584 tcaaaattacctctcaaatctatctttcgattttgttgcatacgcaaatcatggtctccattgtttgaaaacccttatttcatgaacatctttcgaagaa 34287683  T
Q  382 atttcttatacaaggatcattcttgttataatgatacatctttcctc 428  Q
    ||||||||| ||| |||||||| | ||| || ||||||||| |||||    
T  34287684 atttcttatccaatgatcattcatattacaacgatacatctctcctc 34287730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 372
Target Start/End: Complemental strand, 19226307 - 19226212
Alignment:
Q  277 ttttgtcaaaattacctctcaaatctttgattcgattttgctgtgtacaaaaatcatggactctcttgtttgaaaacccttatttcatgagcatgt 372  Q
    ||||||||||| ||||| | |||||| | | |||||||   ||||||   ||||| |||||||| |||||||||||| |||||||||||| |||||    
T  19226307 ttttgtcaaaactacctttgaaatctgtaaatcgatttacttgtgtatgcaaatcgtggactcttttgtttgaaaactcttatttcatgaacatgt 19226212  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 280 - 374
Target Start/End: Original strand, 361020 - 361114
Alignment:
Q  280 tgtcaaaattacctctcaaatctttgattcgattttgctgtgtacaaaaatcatggactctcttgtttgaaaacccttatttcatgagcatgtat 374  Q
    ||||||| || ||||| |||||||||  ||||||    |||||||| |||||||||  | | || |||||||||||||||||||||| |||||||    
T  361020 tgtcaaagttgcctctaaaatctttgcatcgattcaaatgtgtacacaaatcatgggttatgttatttgaaaacccttatttcatgaacatgtat 361114  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 372
Target Start/End: Original strand, 19220747 - 19220792
Alignment:
Q  327 aaatcatggactctcttgtttgaaaacccttatttcatgagcatgt 372  Q
    ||||| |||||||| |||||||||||| |||||||||||| |||||    
T  19220747 aaatcgtggactcttttgtttgaaaactcttatttcatgaacatgt 19220792  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 309 - 373
Target Start/End: Complemental strand, 40399786 - 40399722
Alignment:
Q  309 cgattttgctgtgtacaaaaatcatggactctcttgtttgaaaacccttatttcatgagcatgta 373  Q
    |||||||  ||||| || |||||||||||||| || || ||||||||| ||||||||| ||||||    
T  40399786 cgattttcttgtgttcacaaatcatggactcttttattcgaaaaccctaatttcatgaacatgta 40399722  T

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Target: scaffold0129 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 285 - 374
Target Start/End: Original strand, 9590 - 9679
Alignment:
Q  285 aaattacctctcaaatctttgattcgattttgctgtgtacaaaaatcatggactctcttgtttgaaaacccttatttcatgagcatgtat 374  Q
    ||||| ||||| ||||||||||  |||||| | |||||||| ||||||||| ||| ||| |||||||||||| ||||||||| |||||||    
T  9590 aaattgcctcttaaatctttgaaacgatttagttgtgtacataaatcatggtctcgcttatttgaaaaccctaatttcatgaacatgtat 9679  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 282 - 374
Target Start/End: Complemental strand, 287550 - 287458
Alignment:
Q  282 tcaaaattacctctcaaatctttgattcgattttgctgtgtacaaaaatcatggactctcttgtttgaaaacccttatttcatgagcatgtat 374  Q
    |||||||| ||||| |||||||| |  |||||| | ||||||   |||||||||||||||||||||||||| | | | ||||||| |||||||    
T  287550 tcaaaattgcctctaaaatctttaaaacgatttggatgtgtatgtaaatcatggactctcttgtttgaaaatcttcacttcatgaccatgtat 287458  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 288 - 371
Target Start/End: Complemental strand, 21379389 - 21379306
Alignment:
Q  288 ttacctctcaaatctttgattcgattttgctgtgtacaaaaatcatggactctcttgtttgaaaacccttatttcatgagcatg 371  Q
    |||||||| ||||||||||  |||||| | || || |  ||||||||| ||||||| ||||||||| |||||||||||| ||||    
T  21379389 ttacctcttaaatctttgaagcgatttggatgcgtccgtaaatcatggtctctcttatttgaaaacacttatttcatgaacatg 21379306  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 372
Target Start/End: Original strand, 25627371 - 25627416
Alignment:
Q  327 aaatcatggactctcttgtttgaaaacccttatttcatgagcatgt 372  Q
    ||||||||| ||||||| ||||||||||||| |||||||| |||||    
T  25627371 aaatcatggtctctcttatttgaaaacccttctttcatgaccatgt 25627416  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 282 - 374
Target Start/End: Original strand, 16920093 - 16920185
Alignment:
Q  282 tcaaaattacctctcaaatctttgattcgattttgctgtgtacaaaaatcatggactctcttgtttgaaaacccttatttcatgagcatgtat 374  Q
    |||| ||||||||| ||||||||||  |||||| | || ||||  ||||||||| |  | ||||||||||||| | ||||||||| |||||||    
T  16920093 tcaacattacctctaaaatctttgaagcgatttggatgcgtacgtaaatcatgggcctttttgtttgaaaaccttcatttcatgaccatgtat 16920185  T

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