View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17413_high_9 (Length: 394)
Name: NF17413_high_9
Description: NF17413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17413_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-109; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 16 - 245
Target Start/End: Complemental strand, 45231000 - 45230771
Alignment:
| Q |
16 |
atcttgtactattcagctcaattcatgatttgtctagaaattattaaagccctgtgacatggcattctaaatgannnnnnnctgcattatctaccgttgt |
115 |
Q |
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| T |
45231000 |
atcttgtactattcagctcaattcatgatttgtctagaaattattaaagccctgtgacatggcattctaaatgatttttttctgcattatctaccgttgt |
45230901 |
T |
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| Q |
116 |
tatgtggcactatcgtggattttacaaggagacaaactatcattcatctactacatttataggtgttttatttgcacaccggcactctacaacactagca |
215 |
Q |
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| T |
45230900 |
tatgtggcactatcgtggattttacaaggagacaaactatcattcatctactacatttatagatgttttatttgcacaccggcactctacaacactagca |
45230801 |
T |
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| Q |
216 |
ctctagtgtccgtaaaatgagtttgttttc |
245 |
Q |
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| T |
45230800 |
ctccagtgtccgtaaaatgagtttgttttc |
45230771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 247 - 385
Target Start/End: Complemental strand, 45229965 - 45229827
Alignment:
| Q |
247 |
aatgtgtagtaatgacagtatctcagttttatggaaattgctacttatgtttgatttatgcaacaggtataataaaggtgattgggaaacttgtgatgaa |
346 |
Q |
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| T |
45229965 |
aatgtatagtaatgacagtatctcagttttatggatattactacttatgtttgatttatgcaacaggtataataaaggtgattgggaaacttgtgatgaa |
45229866 |
T |
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| Q |
347 |
aaatgttcagcaggtatttcataatcagtatgacctatg |
385 |
Q |
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| T |
45229865 |
aaatgttcagcaggtatttcataatcagtatgacctatg |
45229827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 186 - 385
Target Start/End: Complemental strand, 45245946 - 45245747
Alignment:
| Q |
186 |
tttgcacaccggcactctacaacactagcactctagtgtccgtaaaatgagtttgttttcaaatgtgtag-taatgacagtatctcagttttatggaaat |
284 |
Q |
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| T |
45245946 |
tttgcacactagcactctacaacattagcgct-tagtgtccataaaatgtgtttgttttctaatatctacataatgacagtagctgagttttatagatat |
45245848 |
T |
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| Q |
285 |
tgctacttatgtttgatttatgcaacaggtataataaaggtgattgggaaacttgtgatgaaaaatgttcagcaggtatttcataatcagtatgacctat |
384 |
Q |
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| T |
45245847 |
tgctacttatgtttgatttatgcaacaggtataatacaggtgattgggaaacttgtgatgaaaaatgttcagcaggtatgtcataatcagtatgacctat |
45245748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 16 - 166
Target Start/End: Complemental strand, 45246472 - 45246322
Alignment:
| Q |
16 |
atcttgtactattcagctcaattcatgatttgtctagaaattattaaagccctgtgacatggcattctaaatgannnnnnnctgcattatctaccgttgt |
115 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
45246472 |
atcttgtactattcatctcaattcatgatttgtctagaaattattaaagccctgtgacatggcattctaaatgattttttcctgcattatctaccgttgt |
45246373 |
T |
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| Q |
116 |
tatgtggcactatcgtggattttacaaggagacaaactatcattcatctac |
166 |
Q |
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|| ||| ||||||| |||||||||||| ||||||| | ||||||||||||| |
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| T |
45246372 |
taagtgccactatcttggattttacaatgagacaagcgatcattcatctac |
45246322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 293 - 383
Target Start/End: Complemental strand, 45209650 - 45209560
Alignment:
| Q |
293 |
atgtttgatttatgcaacaggtataataaaggtgattgggaaacttgtgatgaaaaatgttcagcaggtatttcataatcagtatgaccta |
383 |
Q |
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| T |
45209650 |
atgtttgatttatgcaacaggtatagtaaatgtggttggcaaacttgtgatgaaaaacgttccacaggtatgtcaaaatcattatgaccta |
45209560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 310 - 362
Target Start/End: Complemental strand, 45204135 - 45204083
Alignment:
| Q |
310 |
caggtataataaaggtgattgggaaacttgtgatgaaaaatgttcagcaggta |
362 |
Q |
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| T |
45204135 |
caggtctaataaatgtggttgggagacttgtgatgaaaaatgtccagcaggta |
45204083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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