View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17413_low_14 (Length: 360)
Name: NF17413_low_14
Description: NF17413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17413_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 20 - 297
Target Start/End: Original strand, 23552788 - 23553064
Alignment:
| Q |
20 |
cctgttcttacttgttgtggccatttgttttgttggccatgcttgtatagatggttgaatacaaaatcaccattgtcgtttagaagatcctctctagcta |
119 |
Q |
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| T |
23552788 |
cctgttcttacttgttgcggtcatttgttttgttggccatgcttgtatagatggttgaatacaaaatcaccattgtcgtttagaagatcctctctagcta |
23552887 |
T |
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| Q |
120 |
aagaatgtcctgtctgtaagggtgaagttactgataagactgttactccaatttatggtggtgggaatgacgtcgaggtggttcgtgctgaggattcaag |
219 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
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| T |
23552888 |
aagaatgtcctgtctgcaagggtgaagttactgataagactgttactccaatttatggtggtgggaatgaagttgaggtggttcgtgctgaggattcaag |
23552987 |
T |
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| Q |
220 |
ttctaccactctgcaaatccctcccaggcctaatgcaaggcgtgttccgagtgtcccgagtgctgaggattcaagttc |
297 |
Q |
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| T |
23552988 |
ttctaccactctgcaaatccctcccagacctaatgcaa-gcgtgttccgagtgtctcgagtgctgaggattcaagttc |
23553064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 18 - 264
Target Start/End: Original strand, 23305306 - 23305552
Alignment:
| Q |
18 |
atcctgttcttacttgttgtggccatttgttttgttggccatgcttgtatagatggttgaatacaaaatcaccattgtcgtttagaagatcctctctagc |
117 |
Q |
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| T |
23305306 |
atcctgttcttacttgttgtggccatttgttttgttggccatgcttgtatagatggttgaatacaaaatcaccattgtcgtttacaagatcctctctagc |
23305405 |
T |
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| Q |
118 |
taaagaatgtcctgtctgtaagggtgaagttactgataagactgttactccaatttatggtggtgggaatgacgtcgaggtggttcgtgctgaggattca |
217 |
Q |
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| T |
23305406 |
taaagaatgtcctgtctgcaagggtgaagttactgataagactgttactccaatttatggtggtgggaatgacgtcgaggtggttcgtgctgaggattca |
23305505 |
T |
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| Q |
218 |
agttctaccactctgcaaatccctcccaggcctaatgcaaggcgtgt |
264 |
Q |
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| T |
23305506 |
agttctaccactctgcaaatccctcccagacctaatgcaaggcgtgt |
23305552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 204 - 317
Target Start/End: Original strand, 23553046 - 23553159
Alignment:
| Q |
204 |
gtgctgaggattcaagttctaccactctgcaaatccctcccaggcctaatgcaaggcgtgttccgagtgtcccgagtgctgaggattcaagttcaacatt |
303 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
23553046 |
gtgctgaggattcaagttctaccactctgcaaatccctcccaggcctaatgcaaggcgtgttccgagtgtctcgagtgctgaggattcaagttcaacatt |
23553145 |
T |
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| Q |
304 |
ctttcctttttcca |
317 |
Q |
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| T |
23553146 |
atctcctttttcca |
23553159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 23324202 - 23324260
Alignment:
| Q |
18 |
atcctgttcttacttgttgtggccatttgttttgttggccatgcttgtatagatggttg |
76 |
Q |
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||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
23324202 |
atcctgtggttacttgttgtggtcatttgttttgttggccatgcttgtatagatggttg |
23324260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 118 - 261
Target Start/End: Original strand, 23235094 - 23235231
Alignment:
| Q |
118 |
taaagaatgtcctgtctgtaagggtgaagttactgataagactgttactccaatttatggtggtgggaatgacgtcgaggtggttcgtgctgaggattca |
217 |
Q |
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||||||||||||||| || ||||| ||||||| ||||||| |||| ||| || ||||||||||||||||| ||||| |||| || ||||||||| |
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| T |
23235094 |
taaagaatgtcctgtttgcaagggggaagttaaggataagaaggttattcctatatatggtggtgggaatgatgtcga---ggttggtcacgaggattca |
23235190 |
T |
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| Q |
218 |
agttctaccactctgcaaatccctcccaggcctaatgcaaggcg |
261 |
Q |
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|| | |||||||||||||||||| ||| |||||||||||||| |
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| T |
23235191 |
agct---ccactctgcaaatccctcgcagacctaatgcaaggcg |
23235231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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