View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17413_low_17 (Length: 290)

Name: NF17413_low_17
Description: NF17413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17413_low_17
NF17413_low_17
[»] chr7 (1 HSPs)
chr7 (14-274)||(28474701-28474964)
[»] chr2 (2 HSPs)
chr2 (165-213)||(36499219-36499267)
chr2 (85-133)||(19374180-19374228)
[»] chr5 (2 HSPs)
chr5 (151-205)||(20454726-20454780)
chr5 (62-122)||(33107189-33107249)
[»] chr4 (3 HSPs)
chr4 (152-214)||(5371318-5371380)
chr4 (32-127)||(5371183-5371278)
chr4 (79-121)||(52371605-52371647)
[»] chr3 (2 HSPs)
chr3 (159-212)||(41703488-41703541)
chr3 (165-213)||(37105446-37105494)


Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 14 - 274
Target Start/End: Complemental strand, 28474964 - 28474701
Alignment:
Q  14 attatactatgatttaaatggactccacttgtgtgtcgttaaggaggaaatgtcactaacattattcaatccaattgtaatacataaaccaattcaacta 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  28474964 attatactatgatttaaatggactccacttgtgtgtcgttaaggaggaaatgtcactaacattactcaatccaattgtaatacataaaccaattcaacta 28474865  T
Q  114 ttttctctctcttttacatac---tttatgtttnnnnnnnttgtcatgtgtcggacttgaattggtcaatgtcatgtaacattatgtcacacaagcgcaa 210  Q
    |||||||||||||||||||||   |||||||||       ||||||| |||||||||||||||| ||||| ||||| |||||||||||||||||||||||    
T  28474864 ttttctctctcttttacatacttttttatgtttaaaaaaattgtcatatgtcggacttgaattgatcaatatcatgcaacattatgtcacacaagcgcaa 28474765  T
Q  211 tccaatttaaatggataccaacgtgcgtgagaaattgttaaatattagaatagttatatagaag 274  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  28474764 tccaatttaaatggataccaacgtgcgtgagaaattgttaaatattagaatagttatattgaag 28474701  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 165 - 213
Target Start/End: Complemental strand, 36499267 - 36499219
Alignment:
Q  165 acttgaattggtcaatgtcatgtaacattatgtcacacaagcgcaatcc 213  Q
    ||||||||| |||||| |||||||||||||||||||||||| |||||||    
T  36499267 acttgaattagtcaatatcatgtaacattatgtcacacaagtgcaatcc 36499219  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 133
Target Start/End: Complemental strand, 19374228 - 19374180
Alignment:
Q  85 caattgtaatacataaaccaattcaactattttctctctcttttacata 133  Q
    ||||||| | |||||| |||||||||||||||||||||||||| |||||    
T  19374228 caattgtgacacataagccaattcaactattttctctctctttcacata 19374180  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 151 - 205
Target Start/End: Original strand, 20454726 - 20454780
Alignment:
Q  151 ttgtcatgtgtcggacttgaattggtcaatgtcatgtaacattatgtcacacaag 205  Q
    |||||| |||||  ||||||||||||||||| ||||| |||||||||||||||||    
T  20454726 ttgtcacgtgtcacacttgaattggtcaatggcatgtgacattatgtcacacaag 20454780  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 122
Target Start/End: Complemental strand, 33107249 - 33107189
Alignment:
Q  62 aatgtcactaacattattcaatccaattgtaatacataaaccaattcaactattttctctc 122  Q
    |||||| |||| |||  |||||| |||||||||||||||  ||||||||||||| ||||||    
T  33107249 aatgtctctaatattggtcaatctaattgtaatacataagtcaattcaactattatctctc 33107189  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 214
Target Start/End: Original strand, 5371318 - 5371380
Alignment:
Q  152 tgtcatgtgtcggacttgaattggtcaatgtcatgtaacattatgtcacacaagcgcaatcca 214  Q
    ||||| |||||  ||||||||||||||||| ||||| |||||||||| |||||| ||||||||    
T  5371318 tgtcacgtgtcacacttgaattggtcaatggcatgtgacattatgtcgcacaagtgcaatcca 5371380  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 127
Target Start/End: Original strand, 5371183 - 5371278
Alignment:
Q  32 tggactccacttgtgtgtcgttaaggaggaaatgtcactaacattattcaatccaattgtaatacataaaccaattcaactattttctctctcttt 127  Q
    |||| |||||||||||| | ||||||||| ||||| ||| |||||  |||||| |||||| | |||| | |||| | |||||||||| ||||||||    
T  5371183 tggattccacttgtgtgccattaaggagggaatgttactgacattgatcaatctaattgtgacacatgagccaaattaactattttcactctcttt 5371278  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 121
Target Start/End: Original strand, 52371605 - 52371647
Alignment:
Q  79 tcaatccaattgtaatacataaaccaattcaactattttctct 121  Q
    ||||| ||||||||| ||||||| |||||||||||||||||||    
T  52371605 tcaattcaattgtaacacataaatcaattcaactattttctct 52371647  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 212
Target Start/End: Original strand, 41703488 - 41703541
Alignment:
Q  159 tgtcggacttgaattggtcaatgtcatgtaacattatgtcacacaagcgcaatc 212  Q
    ||||| ||||||||||| ||||||||||| ||||||||||||| ||| ||||||    
T  41703488 tgtcgaacttgaattggccaatgtcatgtgacattatgtcacataagtgcaatc 41703541  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 213
Target Start/End: Complemental strand, 37105494 - 37105446
Alignment:
Q  165 acttgaattggtcaatgtcatgtaacattatgtcacacaagcgcaatcc 213  Q
    ||||||||||||||||||||||| ||||| | || |||||| |||||||    
T  37105494 acttgaattggtcaatgtcatgtgacattttatcgcacaagtgcaatcc 37105446  T

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