View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17413_low_2 (Length: 769)
Name: NF17413_low_2
Description: NF17413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17413_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 364; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 12 - 466
Target Start/End: Original strand, 26811239 - 26811690
Alignment:
| Q |
12 |
taattctaaaataacttttattttctatctatatgttgccgaatcttacttttattttctattgtaaacaggtggaaagcttgatgatattactgtaatt |
111 |
Q |
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| T |
26811239 |
taattctaaaataatttttattttctatctatatgttgccgactcttacttttaatttctattgtaaacaggtggaaagcttgatgatattactgtagtt |
26811338 |
T |
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| Q |
112 |
gttggtcaggtggtaaattcatgagatttactaatctcaatgattgattatgctgtaaagaaaacaaggtactgattgttaagatcaccaccagagaagg |
211 |
Q |
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| T |
26811339 |
gttggtcaggtggtaaattcatgagatttactaatctcaatgattgattatgctgtaaagaaaacaaggtaccgattgttaagatcaccaccagagaagg |
26811438 |
T |
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| Q |
212 |
agttgccttaagtatattgtggcactaaactttggtcatgctcttaaattaannnnnnnncaatggaagttttcctgctttgtcgggaagtatgtagagc |
311 |
Q |
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| T |
26811439 |
agttgccttaagtatattgtggcactaaactttggtcatgctcttaaattatttttttttc-atggaaattttcctgctttgccgtgaagtatgtagagc |
26811537 |
T |
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| Q |
312 |
ttcatgcatatagaaagaagctgtataagatattcattcaaagttagtttttgtttatgagatgttgtacataatatttggaaccagtggtaagcaaaaa |
411 |
Q |
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| T |
26811538 |
ttcatgcatatagaaagaagctgtataagatattcattcaaagttagtttttgtttatgagatgttgtacataatatttggaaccagtggtaagcaaaaa |
26811637 |
T |
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| Q |
412 |
acatgtaatgttaagataaagcattaccctgactgcttgagcttattatacttct |
466 |
Q |
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| T |
26811638 |
acatgtaatgttaagataaatcattaccc--actgcttgagctttttatatttct |
26811690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 504 - 748
Target Start/End: Original strand, 26811777 - 26812021
Alignment:
| Q |
504 |
tagacagcatggttttaacatgctgtcataaatcacatgtgaatcaaggagcaagagacacatgaatgaatactatagtagaaatttatgattgatattt |
603 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
26811777 |
tagacaacatggttttaacatgctgtcataaatcacatgtgaatcaaggagcaagagacacatgaatgaatactataatagaaatttatgattgatattt |
26811876 |
T |
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| Q |
604 |
aggtgcggaatgatttgaagaatccgtgatggaaggatacatgacggccaacaggtactactcgtccaaagttttcctgcctgtggccaagaaaggatta |
703 |
Q |
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| T |
26811877 |
aggtgcggaatgatttgaagaatccgtgatggaaggatgcatgacggccgacaggtactactcgtccacagttttcctgcctgtggccaagaaaggatta |
26811976 |
T |
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| Q |
704 |
gcatgcaatgaatcctccggtggttgcaattgtttgccaatctcg |
748 |
Q |
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| T |
26811977 |
gcatgcaatgaatcctccgaaggttgcaattgtttgccaatctcg |
26812021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 458 - 487
Target Start/End: Original strand, 26811723 - 26811752
Alignment:
| Q |
458 |
tatacttcttttatatatttatatttataa |
487 |
Q |
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| T |
26811723 |
tatacttcttttatatatttatatttataa |
26811752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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