View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17413_low_20 (Length: 252)
Name: NF17413_low_20
Description: NF17413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17413_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 9 - 246
Target Start/End: Original strand, 10069011 - 10069247
Alignment:
| Q |
9 |
cagaacctgtgatgctaaaataacattacaaacctcacaaatttcttttcatttgtagtcatgctttataggaaatacactttacttgaacaacagaaaa |
108 |
Q |
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| T |
10069011 |
cagaacatgtgatgctaaaataacactgcaaacctcacaaatttcttttcatttgtagtcatgctttataggaaatacactttacttgaacaacagaaaa |
10069110 |
T |
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| Q |
109 |
ttcactgcaaccctgcaaaatccatcttgaaattagaatttttgagttcacacataactagnnnnnnnnggtaagctattttatgtatgactataagtgc |
208 |
Q |
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| T |
10069111 |
ttcactgcatccctgaaaaatccatcttgaaattagaatttttgagttcacacataactag-aaaaaaaggtaagctattttatgtatgactataagtgg |
10069209 |
T |
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| Q |
209 |
tgcatggctataaaatcattatccaatttcattattta |
246 |
Q |
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|||||||||||||||| ||||||||||||||||||||| |
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| T |
10069210 |
tgcatggctataaaatgattatccaatttcattattta |
10069247 |
T |
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