View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17413_low_21 (Length: 250)

Name: NF17413_low_21
Description: NF17413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17413_low_21
NF17413_low_21
[»] chr8 (28 HSPs)
chr8 (1-240)||(19172498-19172737)
chr8 (4-240)||(19287912-19288145)
chr8 (5-239)||(19376819-19377056)
chr8 (132-239)||(19503747-19503854)
chr8 (1-82)||(19410966-19411047)
chr8 (1-82)||(19457985-19458066)
chr8 (1-82)||(19523012-19523093)
chr8 (132-239)||(19345489-19345596)
chr8 (1-82)||(19404943-19405024)
chr8 (2-78)||(19337691-19337767)
chr8 (2-78)||(19355711-19355787)
chr8 (1-82)||(19468432-19468513)
chr8 (1-82)||(19555353-19555434)
chr8 (132-239)||(19390944-19391051)
chr8 (4-81)||(19390790-19390867)
chr8 (18-82)||(19469380-19469444)
chr8 (18-82)||(19540304-19540368)
chr8 (1-56)||(19345355-19345410)
chr8 (1-56)||(19503933-19503988)
chr8 (18-78)||(19592330-19592390)
chr8 (132-231)||(19592447-19592546)
chr8 (132-231)||(19469228-19469327)
chr8 (132-231)||(19540152-19540251)
chr8 (184-239)||(19450665-19450720)
chr8 (184-239)||(19530356-19530411)
chr8 (134-231)||(19411102-19411199)
chr8 (132-204)||(19355844-19355916)
chr8 (132-239)||(19405077-19405184)
[»] chr1 (2 HSPs)
chr1 (5-78)||(36314490-36314563)
chr1 (139-239)||(36314320-36314420)
[»] chr6 (1 HSPs)
chr6 (3-77)||(19543263-19543337)


Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 19172737 - 19172498
Alignment:
Q  1 tatgtgttatggatataatagcgatggagggtgccaaaaatgggaggatataccaacctgcagggaacccggtgaggtgtttnnnnnnntgacaggcaga 100  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||    
T  19172737 tatgtgttatggctataataccgatggagggtgccaaaaatgggaggatataccaacctgcagggaacccggtgaggtgtttaaaaaaatgacaggcaga 19172638  T
Q  101 cccaacaccgacagtgcaaccatccaagacaatgtgacttatggttacagtgattgtaagatcagttgttggagaaactgtgactgcaatgggttccaag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  19172637 cccaacaccgacagtgcaaccatccaagacaatgtgacttatggttacagtgattgtaagatcagttgttggagaaactgtgaatgcaatgggttccaag 19172538  T
Q  201 aattttatcgtaatgggactggatgtatattttattcatc 240  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  19172537 aattttatcgtaatgggactggatgtatattttattcatc 19172498  T

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Target: chr8; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 4 - 240
Target Start/End: Original strand, 19287912 - 19288145
Alignment:
Q  4 gtgttatggatataatagcgatggagggtgccaaaaatgggaggatataccaacctgcagggaacccggtgaggtgtttnnnnnnntgacaggcagaccc 103  Q
    |||||||||||||||||  |||| |||||||||||||||||||||||| ||||| ||||||||||  |||||||| |||        |||||||||||||    
T  19287912 gtgttatggatataataatgatgaagggtgccaaaaatgggaggatatgccaacttgcagggaacgtggtgaggtctttcaaaaaaagacaggcagaccc 19288011  T
Q  104 aacaccgacagtgcaaccatccaagacaatgtgacttatggttacagtgattgtaagatcagttgttggagaaactgtgactgcaatgggttccaagaat 203  Q
    ||||||   || | |||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  19288012 aacacc---agggaaaccatccaagacaatgtgacttatggttatagtgactgtaagctcagttgttggagaaactgtgactgcaatgggttccaagaat 19288108  T
Q  204 tttatcgtaatgggactggatgtatattttattcatc 240  Q
    |||||||||||||||||||||||||||||||||||||    
T  19288109 tttatcgtaatgggactggatgtatattttattcatc 19288145  T

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Target: chr8; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 5 - 239
Target Start/End: Original strand, 19376819 - 19377056
Alignment:
Q  5 tgttatggatataatagcgatggagggtgccaaaaatgggaggatataccaacctgcagggaacccggtgaggtgtttnnnnnnntgacaggcagaccca 104  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||        ||| || ||||| |    
T  19376819 tgttatggatataatagtgatcgagggtgccaaaaatgggaggatataccagcttgcagggaacctggtgaggtgtttcaaagaaagactggaagaccaa 19376918  T
Q  105 acaccgacagtgca---accatccaagacaatgtgacttatggttacagtgattgtaagatcagttgttggagaaactgtgactgcaatgggttccaaga 201  Q
    |||  |||| ||||   |||||  || |  |||||||||||| |||||||||||| ||||| || ||||||||||| ||| | |||||||| ||||||||    
T  19376919 acatagacaatgcatcaaccattgaacaggatgtgacttatgtttacagtgattgcaagataagatgttggagaaattgtaattgcaatggattccaaga 19377018  T
Q  202 attttatcgtaatgggactggatgtatattttattcat 239  Q
    ||||||||| |||||||||||||||||||| |||||||    
T  19377019 attttatcgcaatgggactggatgtatattctattcat 19377056  T

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Target: chr8; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 132 - 239
Target Start/End: Complemental strand, 19503854 - 19503747
Alignment:
Q  132 atgtgacttatggttacagtgattgtaagatcagttgttggagaaactgtgactgcaatgggttccaagaattttatcgtaatgggactggatgtatatt 231  Q
    ||||||||||| ||||||||||||| ||||| || ||||||||||| ||| | |||||||| ||||| ||||||||| ||||||||||||||||||||||    
T  19503854 atgtgacttatagttacagtgattgcaagattagatgttggagaaattgtaattgcaatggattccaggaattttatggtaatgggactggatgtatatt 19503755  T
Q  232 ttattcat 239  Q
     |||||||    
T  19503754 ctattcat 19503747  T

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Target: chr8; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 19410966 - 19411047
Alignment:
Q  1 tatgtgttatggatataatagcgatggagggtgccaaaaatgggaggatataccaacctgcagggaacccggtgaggtgttt 82  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||    
T  19410966 tatgtgttacggatataatagtgatggagggtgccaaaaatgggaggatataccaacttgcagggaacctggtgagatgttt 19411047  T

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Target: chr8; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 19457985 - 19458066
Alignment:
Q  1 tatgtgttatggatataatagcgatggagggtgccaaaaatgggaggatataccaacctgcagggaacccggtgaggtgttt 82  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||    
T  19457985 tatgtgttacggatataatagtgatggagggtgccaaaaatgggaggatataccaacttgcagggaacctggtgagatgttt 19458066  T

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Target: chr8; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 19523093 - 19523012
Alignment:
Q  1 tatgtgttatggatataatagcgatggagggtgccaaaaatgggaggatataccaacctgcagggaacccggtgaggtgttt 82  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||    
T  19523093 tatgtgttacggatataatagtgatggagggtgccaaaaatgggaggatataccaacttgcagggaacctggtgagatgttt 19523012  T

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Target: chr8; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 132 - 239
Target Start/End: Original strand, 19345489 - 19345596
Alignment:
Q  132 atgtgacttatggttacagtgattgtaagatcagttgttggagaaactgtgactgcaatgggttccaagaattttatcgtaatgggactggatgtatatt 231  Q
    ||||||||||| ||||||||||||| ||||| || ||||||||||| ||| | |||||||| ||||| ||||||||| |||||||||||||||||| |||    
T  19345489 atgtgacttatagttacagtgattgcaagattagatgttggagaaattgttattgcaatggattccaggaattttatggtaatgggactggatgtacatt 19345588  T
Q  232 ttattcat 239  Q
     |||||||    
T  19345589 ctattcat 19345596  T

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Target: chr8; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 19404943 - 19405024
Alignment:
Q  1 tatgtgttatggatataatagcgatggagggtgccaaaaatgggaggatataccaacctgcagggaacccggtgaggtgttt 82  Q
    ||||||||||||||||||||| || |||||||||||||| ||||||||||||||||| || |||||||| ||||||||||||    
T  19404943 tatgtgttatggatataatagggacggagggtgccaaaagtgggaggatataccaacttgtagggaacctggtgaggtgttt 19405024  T

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Target: chr8; HSP #10
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 2 - 78
Target Start/End: Original strand, 19337691 - 19337767
Alignment:
Q  2 atgtgttatggatataatagcgatggagggtgccaaaaatgggaggatataccaacctgcagggaacccggtgaggt 78  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||  || |||||||| ||||||||    
T  19337691 atgtgttatggatataatagcgatggagggtgccaaaaatgggaggaaataccaaattgtagggaacctggtgaggt 19337767  T

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Target: chr8; HSP #11
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 2 - 78
Target Start/End: Original strand, 19355711 - 19355787
Alignment:
Q  2 atgtgttatggatataatagcgatggagggtgccaaaaatgggaggatataccaacctgcagggaacccggtgaggt 78  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||  || |||||||| ||||||||    
T  19355711 atgtgttatggatataatagcgatggagggtgccaaaaatgggaggaaataccaaattgtagggaacctggtgaggt 19355787  T

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Target: chr8; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 19468513 - 19468432
Alignment:
Q  1 tatgtgttatggatataatagcgatggagggtgccaaaaatgggaggatataccaacctgcagggaacccggtgaggtgttt 82  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| || |||| ||| ||||||| ||||    
T  19468513 tatgtgttatggatataatagtgatggaggatgccaaaaatgggaggatataccaacttgtagggcacctggtgaggggttt 19468432  T

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Target: chr8; HSP #13
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 19555434 - 19555353
Alignment:
Q  1 tatgtgttatggatataatagcgatggagggtgccaaaaatgggaggatataccaacctgcagggaacccggtgaggtgttt 82  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| || |||| ||| ||||||| ||||    
T  19555434 tatgtgttatggatataatagtgatggaggatgccaaaaatgggaggatataccaacttgtagggcacctggtgaggggttt 19555353  T

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Target: chr8; HSP #14
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 132 - 239
Target Start/End: Original strand, 19390944 - 19391051
Alignment:
Q  132 atgtgacttatggttacagtgattgtaagatcagttgttggagaaactgtgactgcaatgggttccaagaattttatcgtaatgggactggatgtatatt 231  Q
    ||||||||||| ||||||||||||| ||||| || ||||||| ||| |||   |||||||| ||||||||||| |||  |||||||||||||||||||||    
T  19390944 atgtgacttatagttacagtgattgcaagatgagatgttggaaaaattgtagttgcaatggattccaagaattgtatgataatgggactggatgtatatt 19391043  T
Q  232 ttattcat 239  Q
     |||||||    
T  19391044 ctattcat 19391051  T

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Target: chr8; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 4 - 81
Target Start/End: Original strand, 19390790 - 19390867
Alignment:
Q  4 gtgttatggatataatagcgatggagggtgccaaaaatgggaggatataccaacctgcagggaacccggtgaggtgtt 81  Q
    |||||||||||||||||| ||||  ||||||||||||||||||||||||||||| |||||||| ||  ||||||||||    
T  19390790 gtgttatggatataatagtgatgccgggtgccaaaaatgggaggatataccaacttgcagggaccctcgtgaggtgtt 19390867  T

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Target: chr8; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 19469444 - 19469380
Alignment:
Q  18 atagcgatggagggtgccaaaaatgggaggatataccaacctgcagggaacccggtgaggtgttt 82  Q
    |||| |||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  19469444 atagtgatggaggatgccaaaaatgggaggatataccaacttgcagggaacctggtgaggtgttt 19469380  T

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Target: chr8; HSP #17
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 19540368 - 19540304
Alignment:
Q  18 atagcgatggagggtgccaaaaatgggaggatataccaacctgcagggaacccggtgaggtgttt 82  Q
    |||| |||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  19540368 atagtgatggaggatgccaaaaatgggaggatataccaacttgcagggaacctggtgaggtgttt 19540304  T

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Target: chr8; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 19345355 - 19345410
Alignment:
Q  1 tatgtgttatggatataatagcgatggagggtgccaaaaatgggaggatataccaa 56  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  19345355 tatgtgttatggatataatagcaatggagggtgccaaaaatgggaggaaataccaa 19345410  T

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Target: chr8; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 19503988 - 19503933
Alignment:
Q  1 tatgtgttatggatataatagcgatggagggtgccaaaaatgggaggatataccaa 56  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  19503988 tatgtgttatggatataatagcaatggagggtgccaaaaatgggaggaaataccaa 19503933  T

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Target: chr8; HSP #20
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 19592330 - 19592390
Alignment:
Q  18 atagcgatggagggtgccaaaaatgggaggatataccaacctgcagggaacccggtgaggt 78  Q
    |||| |||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||    
T  19592330 atagtgatggaggatgccaaaaatgggaggatataccaacttgcagggaacctggtgaggt 19592390  T

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Target: chr8; HSP #21
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 132 - 231
Target Start/End: Original strand, 19592447 - 19592546
Alignment:
Q  132 atgtgacttatggttacagtgattgtaagatcagttgttggagaaactgtgactgcaatgggttccaagaattttatcgtaatgggactggatgtatatt 231  Q
    ||||||||||| ||||||||||||| ||||| || ||||||||||| ||| | |||| ||  |||||||||| ||||  |||||||||||||||| ||||    
T  19592447 atgtgacttatagttacagtgattgcaagattagatgttggagaaattgtaattgcagtgcattccaagaatattatgataatgggactggatgtgtatt 19592546  T

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Target: chr8; HSP #22
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 132 - 231
Target Start/End: Complemental strand, 19469327 - 19469228
Alignment:
Q  132 atgtgacttatggttacagtgattgtaagatcagttgttggagaaactgtgactgcaatgggttccaagaattttatcgtaatgggactggatgtatatt 231  Q
    ||||||||||| ||||||||||||| ||||| || ||||||| ||| ||| | |||| ||  |||||||||| ||||  |||||||||||||||| ||||    
T  19469327 atgtgacttatagttacagtgattgcaagatgagatgttggaaaaattgtaattgcagtgcattccaagaatattatgataatgggactggatgtgtatt 19469228  T

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Target: chr8; HSP #23
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 132 - 231
Target Start/End: Complemental strand, 19540251 - 19540152
Alignment:
Q  132 atgtgacttatggttacagtgattgtaagatcagttgttggagaaactgtgactgcaatgggttccaagaattttatcgtaatgggactggatgtatatt 231  Q
    ||||||||||| ||||||||||||| ||||| || ||||||| ||| ||| | |||| ||  |||||||||| ||||  |||||||||||||||| ||||    
T  19540251 atgtgacttatagttacagtgattgcaagatgagatgttggaaaaattgtaattgcagtgcattccaagaatattatgataatgggactggatgtgtatt 19540152  T

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Target: chr8; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 239
Target Start/End: Original strand, 19450665 - 19450720
Alignment:
Q  184 ctgcaatgggttccaagaattttatcgtaatgggactggatgtatattttattcat 239  Q
    ||||||||| ||||||||||| | | |||||||||||||||||||||| |||||||    
T  19450665 ctgcaatggattccaagaattatttagtaatgggactggatgtatattctattcat 19450720  T

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Target: chr8; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 239
Target Start/End: Complemental strand, 19530411 - 19530356
Alignment:
Q  184 ctgcaatgggttccaagaattttatcgtaatgggactggatgtatattttattcat 239  Q
    ||||||||| ||||||||||| | | |||||||||||||||||||||| |||||||    
T  19530411 ctgcaatggattccaagaattatttagtaatgggactggatgtatattctattcat 19530356  T

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Target: chr8; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 231
Target Start/End: Original strand, 19411102 - 19411199
Alignment:
Q  134 gtgacttatggttacagtgattgtaagatcagttgttggagaaactgtgactgcaatgggttccaagaattttatcgtaatgggactggatgtatatt 231  Q
    ||||||||| ||||||||||||| |||||||| ||||||| ||| |||   |||||||| ||||||  || |||| |||||  |||||||||| ||||    
T  19411102 gtgacttatagttacagtgattgcaagatcagatgttggaaaaattgtagttgcaatggattccaactatattatagtaatatgactggatgtgtatt 19411199  T

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Target: chr8; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 204
Target Start/End: Original strand, 19355844 - 19355916
Alignment:
Q  132 atgtgacttatggttacagtgattgtaagatcagttgttggagaaactgtgactgcaatgggttccaagaatt 204  Q
    |||||| ||||||||| |||||||| ||||| || ||||||||||| ||| | ||| |||| |||||||||||    
T  19355844 atgtgaattatggttatagtgattgcaagatgagatgttggagaaattgtaattgctatggattccaagaatt 19355916  T

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Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 239
Target Start/End: Original strand, 19405077 - 19405184
Alignment:
Q  132 atgtgacttatggttacagtgattgtaagatcagttgttggagaaactgtgactgcaatgggttccaagaattttatcgtaatgggactggatgtatatt 231  Q
    |||||| |||||||||||||||||| ||||| || ||||||||||| ||| | ||| |||| ||| ||||| | ||  |||||   |||||||||||||     
T  19405077 atgtgaattatggttacagtgattgcaagatgagatgttggagaaattgtaattgctatggattcgaagaactatacagtaattttactggatgtatata 19405176  T
Q  232 ttattcat 239  Q
     |||||||    
T  19405177 ctattcat 19405184  T

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Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 5 - 78
Target Start/End: Complemental strand, 36314563 - 36314490
Alignment:
Q  5 tgttatggatataatagcgatggagggtgccaaaaatgggaggatataccaacctgcagggaacccggtgaggt 78  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||| || |||||||| ||||||||    
T  36314563 tgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggt 36314490  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 239
Target Start/End: Complemental strand, 36314420 - 36314320
Alignment:
Q  139 ttatggttacagtgattgtaagatcagttgttggagaaactgtgactgcaatgggttccaagaattttatcgtaatgggactggatgtatattttattca 238  Q
    |||||||||||||||||| ||||| || ||||||||||| |||   |||||||| |||  |||||| |||  ||||  |||||||||| |||| ||||||    
T  36314420 ttatggttacagtgattgcaagatgagatgttggagaaattgtagttgcaatggattcgtagaattatatgataatttgactggatgtgtattctattca 36314321  T
Q  239 t 239  Q
    |    
T  36314320 t 36314320  T

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Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 77
Target Start/End: Original strand, 19543263 - 19543337
Alignment:
Q  3 tgtgttatggatataatagcgatggagggtgccaaaaatgggaggatataccaacctgcagggaacccggtgagg 77  Q
    |||||||||||||||||| | | |||||||||||||||||||||||||||||||  || |||||||| |||||||    
T  19543263 tgtgttatggatataatatcaacggagggtgccaaaaatgggaggatataccaagttgtagggaacctggtgagg 19543337  T

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