View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17413_low_22 (Length: 240)
Name: NF17413_low_22
Description: NF17413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17413_low_22 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 19 - 240
Target Start/End: Original strand, 3562548 - 3562766
Alignment:
| Q |
19 |
tgtgaaagataaagaaatagaattacctaccatagccgagaagaacagaattgagagaagcaaaaacggcacatgcaaagatatatttcttggaatcatg |
118 |
Q |
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| T |
3562548 |
tgtgaaagataaagaaatagaattacctaccatagccgagaagaacagaattgagagaagcaaaaacggcacatgcaaagatatatttcttggaatcatg |
3562647 |
T |
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| Q |
119 |
cttcctggttgcaaaccctttttcttcttcttcttcctcttcagatgtcatcctaatgtacttatttttagcccctaatggaatctcagatatcacatct |
218 |
Q |
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|||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
3562648 |
cttcctggttgcgaacccttcttcttcttcttcttcctcttcagatgtcatcctaatgtacttatttttagcccctaatggaatctca---atcacatct |
3562744 |
T |
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| Q |
219 |
ccattcccattcccatattctt |
240 |
Q |
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||||||||||| |||| ||||| |
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| T |
3562745 |
ccattcccatttccattttctt |
3562766 |
T |
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