View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17413_low_24 (Length: 236)

Name: NF17413_low_24
Description: NF17413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17413_low_24
NF17413_low_24
[»] chr8 (19 HSPs)
chr8 (16-236)||(19172758-19172978)
chr8 (16-236)||(19287668-19287888)
chr8 (16-200)||(19468570-19468754)
chr8 (16-200)||(19555491-19555675)
chr8 (16-173)||(19390537-19390694)
chr8 (19-186)||(19404705-19404872)
chr8 (16-171)||(19341134-19341289)
chr8 (16-171)||(19370914-19371069)
chr8 (19-186)||(19376574-19376741)
chr8 (16-173)||(19469533-19469690)
chr8 (16-173)||(19540457-19540614)
chr8 (16-173)||(19592084-19592241)
chr8 (16-173)||(19410734-19410891)
chr8 (16-173)||(19457753-19457910)
chr8 (16-173)||(19523168-19523325)
chr8 (16-173)||(19345123-19345280)
chr8 (16-173)||(19504063-19504220)
chr8 (16-148)||(19355427-19355559)
chr8 (16-148)||(19337407-19337539)
[»] chr1 (1 HSPs)
chr1 (16-173)||(36314657-36314814)
[»] chr6 (1 HSPs)
chr6 (24-200)||(19543028-19543204)


Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 16 - 236
Target Start/End: Complemental strand, 19172978 - 19172758
Alignment:
Q  16 aattgaacatcaagcaacgcggcaaagtttattggaaaagcggaaaacttaacagcaatggattattcaagaacattctagtgaaagttcaacatgtgta 115  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19172978 aattgaacatcaagcaacgcggcaaagtgtattggaaaagcggaaaacttaacagcaatggattattcaagaacattctagtgaaagttcaacatgtgta 19172879  T
Q  116 tcaatacattattgtctctaacaaggatgaagactccttcactttcgaaatcaaagatcagaattataagatgttcccagggtgggaactgttctcaacg 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19172878 tcaatacattattgtctctaacaaggatgaagactccttcactttcgaaatcaaagatcagaattataagatgttcccagggtgggaactgttctcaacg 19172779  T
Q  216 gggatgttaacgagtagtgaa 236  Q
    |||||||||||||||||||||    
T  19172778 gggatgttaacgagtagtgaa 19172758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 16 - 236
Target Start/End: Original strand, 19287668 - 19287888
Alignment:
Q  16 aattgaacatcaagcaacgcggcaaagtttattggaaaagcggaaaacttaacagcaatggattattcaagaacattctagtgaaagttcaacatgtgta 115  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||| ||   ||||||| |||||| ||||||||| |||||||||||||| ||||||    
T  19287668 aattgaacatcaagcaacgcggcaaagtgtattggaaaagcggaaaacgtagacgcaatggtttattcgagaacattccagtgaaagttcaacgtgtgta 19287767  T
Q  116 tcaatacattattgtctctaacaaggatgaagactccttcactttcgaaatcaaagatcagaattataagatgttcccagggtgggaactgttctcaacg 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  ||||||||    
T  19287768 tcaatacattattgtctctaacaaggatgaagactccttcactttcgaaatcaaagatcagaattataagatgttccaagggtgggaactagtctcaacg 19287867  T
Q  216 gggatgttaacgagtagtgaa 236  Q
    |||| ||||||||||||||||    
T  19287868 gggacgttaacgagtagtgaa 19287888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 16 - 200
Target Start/End: Complemental strand, 19468754 - 19468570
Alignment:
Q  16 aattgaacatcaagcaacgcggcaaagtttattggaaaagcggaaaacttaacagcaatggattattcaagaacattctagtgaaagttcaacatgtgta 115  Q
    |||||| ||||||| || |||||||||| ||||||||||||||||||||||| ||||||||||||||| |||| ||||  ||||| ||||||||| ||||    
T  19468754 aattgatcatcaagaaaagcggcaaagtgtattggaaaagcggaaaacttaaaagcaatggattattcgagaatattccggtgaatgttcaacatatgta 19468655  T
Q  116 tcaatacattattgtctctaacaaggatgaagactccttcactttcgaaatcaaagatcagaattataagatgttcccagggtgg 200  Q
    ||| |||||||||||||||||||| || ||||| || ||||||||| ||| ||||||| || ||||||||| ||| ||| |||||    
T  19468654 tcagtacattattgtctctaacaaagacgaagattctttcactttcaaaaccaaagataaggattataagacgttaccatggtgg 19468570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 16 - 200
Target Start/End: Complemental strand, 19555675 - 19555491
Alignment:
Q  16 aattgaacatcaagcaacgcggcaaagtttattggaaaagcggaaaacttaacagcaatggattattcaagaacattctagtgaaagttcaacatgtgta 115  Q
    |||||| ||||||| || |||||||||| ||||||||||||||||||||||| ||||||||||||||| |||| ||||  ||||| ||||||||| ||||    
T  19555675 aattgatcatcaagaaaagcggcaaagtgtattggaaaagcggaaaacttaaaagcaatggattattcgagaatattccggtgaatgttcaacatatgta 19555576  T
Q  116 tcaatacattattgtctctaacaaggatgaagactccttcactttcgaaatcaaagatcagaattataagatgttcccagggtgg 200  Q
    ||| |||||||||||||||||||| || ||||| || ||||||||| ||| ||||||| || ||||||||| ||| ||| |||||    
T  19555575 tcagtacattattgtctctaacaaagacgaagattctttcactttcaaaaccaaagataaggattataagacgttaccatggtgg 19555491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 16 - 173
Target Start/End: Original strand, 19390537 - 19390694
Alignment:
Q  16 aattgaacatcaagcaacgcggcaaagtttattggaaaagcggaaaacttaacagcaatggattattcaagaacattctagtgaaagttcaacatgtgta 115  Q
    |||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||| |||||| |||||||||  ||||| ||||||| | | ||    
T  19390537 aattgaacatcaagaaacgcggcaaagtgtattggaaaagcggaaaacttaaaagcaatggtttattcgagaacattccggtgaatgttcaacgtatata 19390636  T
Q  116 tcaatacattattgtctctaacaaggatgaagactccttcactttcgaaatcaaagat 173  Q
    ||||||||||||||||||||||||||||||||| || ||  |||||||| | ||||||    
T  19390637 tcaatacattattgtctctaacaaggatgaagattcttttgctttcgaagttaaagat 19390694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 19 - 186
Target Start/End: Original strand, 19404705 - 19404872
Alignment:
Q  19 tgaacatcaagcaacgcggcaaagtttattggaaaagcggaaaacttaacagcaatggattattcaagaacattctagtgaaagttcaacatgtgtatca 118  Q
    ||||||||||| || | |||||||| ||||||||||||||||||||||| ||| ||||||||||| |||| ||||  |  || ||||||  | |||||||    
T  19404705 tgaacatcaagaaaagaggcaaagtgtattggaaaagcggaaaacttaaaagcgatggattattcgagaatattccggccaatgttcaaactatgtatca 19404804  T
Q  119 atacattattgtctctaacaaggatgaagactccttcactttcgaaatcaaagatcagaattataaga 186  Q
    ||||| |||||||||||||||||||||||| || ||||||||| |||||||||||| |||||||||||    
T  19404805 atacactattgtctctaacaaggatgaagattctttcactttcaaaatcaaagatcggaattataaga 19404872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 16 - 171
Target Start/End: Original strand, 19341134 - 19341289
Alignment:
Q  16 aattgaacatcaagcaacgcggcaaagtttattggaaaagcggaaaacttaacagcaatggattattcaagaacattctagtgaaagttcaacatgtgta 115  Q
    |||||||||| ||| |||  ||||||||  |||||||||| |||||||||   ||||||||||||||| |||||||||||| ||| || |||||||||||    
T  19341134 aattgaacattaagaaacaaggcaaagtgcattggaaaagtggaaaacttggaagcaatggattattcgagaacattctagagaatgtccaacatgtgta 19341233  T
Q  116 tcaatacattattgtctctaacaaggatgaagactccttcactttcgaaatcaaag 171  Q
    || |||||| |||||||||||||| |||||||||||||||| ||| ||||||||||    
T  19341234 tcgatacatgattgtctctaacaaagatgaagactccttcagttttgaaatcaaag 19341289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 16 - 171
Target Start/End: Original strand, 19370914 - 19371069
Alignment:
Q  16 aattgaacatcaagcaacgcggcaaagtttattggaaaagcggaaaacttaacagcaatggattattcaagaacattctagtgaaagttcaacatgtgta 115  Q
    |||||||||| ||| |||  ||||||||  |||||||||| ||||||||||  ||||||||||||||| ||||||||| || ||| || |||||||||||    
T  19370914 aattgaacattaagaaacaaggcaaagtgcattggaaaagtggaaaacttagaagcaatggattattcgagaacattccagagaatgtccaacatgtgta 19371013  T
Q  116 tcaatacattattgtctctaacaaggatgaagactccttcactttcgaaatcaaag 171  Q
    || |||||| |||||||||||||| |||||||||||||||| ||| ||||||||||    
T  19371014 tcgatacatgattgtctctaacaaagatgaagactccttcagttttgaaatcaaag 19371069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 19 - 186
Target Start/End: Original strand, 19376574 - 19376741
Alignment:
Q  19 tgaacatcaagcaacgcggcaaagtttattggaaaagcggaaaacttaacagcaatggattattcaagaacattctagtgaaagttcaacatgtgtatca 118  Q
    ||||||||||| || |||||||||| ||||||||||||||||||||||| ||||||||||||||| |||| ||||  |  || |||||| || ||||||     
T  19376574 tgaacatcaagaaaagcggcaaagtgtattggaaaagcggaaaacttaaaagcaatggattattcgagaatattccggccaatgttcaaaatatgtatcg 19376673  T
Q  119 atacattattgtctctaacaaggatgaagactccttcactttcgaaatcaaagatcagaattataaga 186  Q
     ||||| ||||||||||||||||||||||| ||||| | ||| ||||| ||||||| |||||||||||    
T  19376674 gtacatcattgtctctaacaaggatgaagattcctttagttttgaaattaaagatcggaattataaga 19376741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 16 - 173
Target Start/End: Complemental strand, 19469690 - 19469533
Alignment:
Q  16 aattgaacatcaagcaacgcggcaaagtttattggaaaagcggaaaacttaacagcaatggattattcaagaacattctagtgaaagttcaacatgtgta 115  Q
    |||||||||||||| || |||||||||| ||||||||||||||||||||||| ||||||||||||||| |||| ||||  |  || |||||| ||  |||    
T  19469690 aattgaacatcaagaaaagcggcaaagtgtattggaaaagcggaaaacttaaaagcaatggattattcgagaatattccggccaatgttcaaaataggta 19469591  T
Q  116 tcaatacattattgtctctaacaaggatgaagactccttcactttcgaaatcaaagat 173  Q
    ||| ||||||||||||||||||||||||||||| || ||||| |||||| | ||||||    
T  19469590 tcagtacattattgtctctaacaaggatgaagattctttcacgttcgaagttaaagat 19469533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 16 - 173
Target Start/End: Complemental strand, 19540614 - 19540457
Alignment:
Q  16 aattgaacatcaagcaacgcggcaaagtttattggaaaagcggaaaacttaacagcaatggattattcaagaacattctagtgaaagttcaacatgtgta 115  Q
    |||||||||||||| || |||||||||| ||||||||||||||||||||||| ||||||||||||||| |||| ||||  |  || |||||| ||  |||    
T  19540614 aattgaacatcaagaaaagcggcaaagtgtattggaaaagcggaaaacttaaaagcaatggattattcgagaatattccggccaatgttcaaaataggta 19540515  T
Q  116 tcaatacattattgtctctaacaaggatgaagactccttcactttcgaaatcaaagat 173  Q
    ||| ||||||||||||||||||||||||||||| || ||||| |||||| | ||||||    
T  19540514 tcagtacattattgtctctaacaaggatgaagattctttcacgttcgaagttaaagat 19540457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 16 - 173
Target Start/End: Original strand, 19592084 - 19592241
Alignment:
Q  16 aattgaacatcaagcaacgcggcaaagtttattggaaaagcggaaaacttaacagcaatggattattcaagaacattctagtgaaagttcaacatgtgta 115  Q
    |||||||||||||| || |||||||||| ||||||||||||||||||||||| ||||||||||||||| |||| ||||  |  || |||||| ||  |||    
T  19592084 aattgaacatcaagaaaagcggcaaagtgtattggaaaagcggaaaacttaaaagcaatggattattcgagaatattccggccaatgttcaaaataggta 19592183  T
Q  116 tcaatacattattgtctctaacaaggatgaagactccttcactttcgaaatcaaagat 173  Q
    ||| ||||||||||||||||||||||||||||| || ||||| |||||| | ||||||    
T  19592184 tcagtacattattgtctctaacaaggatgaagattctttcacgttcgaagttaaagat 19592241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 16 - 173
Target Start/End: Original strand, 19410734 - 19410891
Alignment:
Q  16 aattgaacatcaagcaacgcggcaaagtttattggaaaagcggaaaacttaacagcaatggattattcaagaacattctagtgaaagttcaacatgtgta 115  Q
    |||||||||||||| || |||||||||| ||||||||||||||||||||||| ||||||||||||||| |||| ||||  |  || ||||||  |  |||    
T  19410734 aattgaacatcaagaaaagcggcaaagtgtattggaaaagcggaaaacttaaaagcaatggattattcgagaatattccggccaatgttcaaagtaggta 19410833  T
Q  116 tcaatacattattgtctctaacaaggatgaagactccttcactttcgaaatcaaagat 173  Q
    ||| ||||||||||||||||||||||||||||| || ||||| |||||| | ||||||    
T  19410834 tcagtacattattgtctctaacaaggatgaagattctttcacgttcgaagttaaagat 19410891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 16 - 173
Target Start/End: Original strand, 19457753 - 19457910
Alignment:
Q  16 aattgaacatcaagcaacgcggcaaagtttattggaaaagcggaaaacttaacagcaatggattattcaagaacattctagtgaaagttcaacatgtgta 115  Q
    |||||||||||||| || |||||||||| ||||||||||||||||||||||| ||||||||||||||| |||| ||||  |  || ||||||  |  |||    
T  19457753 aattgaacatcaagaaaagcggcaaagtgtattggaaaagcggaaaacttaaaagcaatggattattcgagaatattccggccaatgttcaaagtaggta 19457852  T
Q  116 tcaatacattattgtctctaacaaggatgaagactccttcactttcgaaatcaaagat 173  Q
    ||| ||||||||||||||||||||||||||||| || ||||| |||||| | ||||||    
T  19457853 tcagtacattattgtctctaacaaggatgaagattctttcacgttcgaagttaaagat 19457910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 16 - 173
Target Start/End: Complemental strand, 19523325 - 19523168
Alignment:
Q  16 aattgaacatcaagcaacgcggcaaagtttattggaaaagcggaaaacttaacagcaatggattattcaagaacattctagtgaaagttcaacatgtgta 115  Q
    |||||||||||||| || |||||||||| ||||||||||||||||||||||| ||||||||||||||| |||| ||||  |  || ||||||  |  |||    
T  19523325 aattgaacatcaagaaaagcggcaaagtgtattggaaaagcggaaaacttaaaagcaatggattattcgagaatattccggccaatgttcaaagtaggta 19523226  T
Q  116 tcaatacattattgtctctaacaaggatgaagactccttcactttcgaaatcaaagat 173  Q
    ||| ||||||||||||||||||||||||||||| || ||||| |||||| | ||||||    
T  19523225 tcagtacattattgtctctaacaaggatgaagattctttcacgttcgaagttaaagat 19523168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 16 - 173
Target Start/End: Original strand, 19345123 - 19345280
Alignment:
Q  16 aattgaacatcaagcaacgcggcaaagtttattggaaaagcggaaaacttaacagcaatggattattcaagaacattctagtgaaagttcaacatgtgta 115  Q
    |||||||||||||| || |||||| ||  ||||||||||||||||||||||| ||||||||| ||||| |||||||||    ||||||||||| | | ||    
T  19345123 aattgaacatcaagaaaagcggcatagcgtattggaaaagcggaaaacttaatagcaatggaatattcgagaacattcccacgaaagttcaacgtatata 19345222  T
Q  116 tcaatacattattgtctctaacaaggatgaagactccttcactttcgaaatcaaagat 173  Q
    ||| ||||||||||||||||||||| ||||||| || ||| |||||||| | ||||||    
T  19345223 tcagtacattattgtctctaacaagaatgaagattctttcgctttcgaagttaaagat 19345280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 16 - 173
Target Start/End: Complemental strand, 19504220 - 19504063
Alignment:
Q  16 aattgaacatcaagcaacgcggcaaagtttattggaaaagcggaaaacttaacagcaatggattattcaagaacattctagtgaaagttcaacatgtgta 115  Q
    |||||||||| | | || ||||||||||  |||||||||||||||||||||| ||||||||| ||||| |||||||||     |||||||||| | | ||    
T  19504220 aattgaacataaggaaaagcggcaaagtgcattggaaaagcggaaaacttaaaagcaatggaatattcgagaacattcccacaaaagttcaacgtatata 19504121  T
Q  116 tcaatacattattgtctctaacaaggatgaagactccttcactttcgaaatcaaagat 173  Q
    ||| ||||||||||||||||||||| ||||||| || ||| |||||||| | ||||||    
T  19504120 tcagtacattattgtctctaacaagaatgaagattctttcgctttcgaagttaaagat 19504063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 16 - 148
Target Start/End: Original strand, 19355427 - 19355559
Alignment:
Q  16 aattgaacatcaagcaacgcggcaaagtttattggaaaagcggaaaacttaacagcaatggattattcaagaacattctagtgaaagttcaacatgtgta 115  Q
    |||||||||| | | || ||||||||||  |||||||||||||||||||||  || |||||| ||||| ||||||||| || ||||||||||  | | ||    
T  19355427 aattgaacataaggaaaagcggcaaagtgcattggaaaagcggaaaacttagaagtaatggaatattcgagaacattccagcgaaagttcaaagtatata 19355526  T
Q  116 tcaatacattattgtctctaacaaggatgaaga 148  Q
    ||  ||||||||||| |||||||||||||||||    
T  19355527 tcggtacattattgtgtctaacaaggatgaaga 19355559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 16 - 148
Target Start/End: Original strand, 19337407 - 19337539
Alignment:
Q  16 aattgaacatcaagcaacgcggcaaagtttattggaaaagcggaaaacttaacagcaatggattattcaagaacattctagtgaaagttcaacatgtgta 115  Q
    |||||||||||| | || | ||||||||  |||||||||| |||||||| || ||||||||| | ||| |||||||||  | ||||||||||| | | ||    
T  19337407 aattgaacatcaggaaaagtggcaaagtgcattggaaaagtggaaaactcaaaagcaatggaatgttcgagaacattcctgcgaaagttcaacgtatata 19337506  T
Q  116 tcaatacattattgtctctaacaaggatgaaga 148  Q
     || ||||||||||| |||||||||||||||||    
T  19337507 ccagtacattattgtgtctaacaaggatgaaga 19337539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 16 - 173
Target Start/End: Complemental strand, 36314814 - 36314657
Alignment:
Q  16 aattgaacatcaagcaacgcggcaaagtttattggaaaagcggaaaacttaacagcaatggattattcaagaacattctagtgaaagttcaacatgtgta 115  Q
    |||||||||||||  ||||||| ||||| ||||||||||| ||||||||||| ||||||||| | ||| ||||||||| |||||| ||||||||| ||||    
T  36314814 aattgaacatcaaaaaacgcgggaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgttcgagaacattccagtgaatgttcaacatatgta 36314715  T
Q  116 tcaatacattattgtctctaacaaggatgaagactccttcactttcgaaatcaaagat 173  Q
    ||| ||||||||||| ||||||||| ||||||| || ||| |||| ||| | ||||||    
T  36314714 tcagtacattattgtttctaacaagaatgaagattctttcgcttttgaagttaaagat 36314657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 24 - 200
Target Start/End: Original strand, 19543028 - 19543204
Alignment:
Q  24 atcaagcaacgcggcaaagtttattggaaaagcggaaaacttaacagcaatggattattcaagaacattctagtgaaagttcaacatgtgtatcaataca 123  Q
    |||||| || |||||||||| ||||||||||||||||||||||  || ||||| ||||||  |||||| |  | ||| ||||||| ||||||| ||||||    
T  19543028 atcaagaaaagcggcaaagtgtattggaaaagcggaaaacttagaagaaatgggttattcgtgaacataccggcgaatgttcaacgtgtgtatgaataca 19543127  T
Q  124 ttattgtctctaacaaggatgaagactccttcactttcgaaatcaaagatcagaattataagatgttcccagggtgg 200  Q
    ||||||| ||||| || |||||||| ||||| |||||  |||| ||||||||||||||||||| ||| |||||||||    
T  19543128 ttattgtttctaagaaagatgaagattcctttacttttaaaattaaagatcagaattataagaagtttccagggtgg 19543204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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