View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17413_low_27 (Length: 229)
Name: NF17413_low_27
Description: NF17413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17413_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 161; Significance: 5e-86; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 25 - 216
Target Start/End: Original strand, 33585340 - 33585532
Alignment:
| Q |
25 |
aacattatagagacccttcgattcttcttctccccttccatacaaatgcacaatgttcaaaactttcaattttccaaaatataatctgcttctcatatct |
124 |
Q |
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| T |
33585340 |
aacattatagagacccttcgattcttcttctccccttccatacaaatacacaatgttcaaaactttcaattttccaaaatataatctgcttctcatatct |
33585439 |
T |
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| Q |
125 |
gatcattgaaaaagtgattatgaaaataggtttgagtt-gtgtatttatgtgaatttcatactcactgccataactaagaccactccctttgt |
216 |
Q |
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| T |
33585440 |
gatcattgaaaaagtgattatgaaaataggtttgagttagtgtaattatgtgaatttcgtactcactgtcaaaactaagaccacaccctttgt |
33585532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 19 - 180
Target Start/End: Original strand, 33592391 - 33592560
Alignment:
| Q |
19 |
tacaaaaacattatagagacccttcgattcttcttctccccttccatacaa--------atgcacaatgttcaaaactttcaattttccaaaatataatc |
110 |
Q |
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| T |
33592391 |
tacaacaacattaacgagacccttagattcttcttctccccttccatacaataaatcaaatacacaatgttcaaaactttcaattttccaaaatataatc |
33592490 |
T |
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| Q |
111 |
tgcttctcatatctgatcattgaaaaagtgattatgaaaataggtttgagtt-gtgtatttatgtgaattt |
180 |
Q |
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| T |
33592491 |
tgcttcttatat-tgatcatcgaaaaagtgattccggaaatagggttgagttaatttatttatgtgaattt |
33592560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 19 - 180
Target Start/End: Original strand, 33599522 - 33599691
Alignment:
| Q |
19 |
tacaaaaacattatagagacccttcgattcttcttctccccttccatacaa--------atgcacaatgttcaaaactttcaattttccaaaatataatc |
110 |
Q |
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| T |
33599522 |
tacaacaacattaacgagacccttagattcttcttctccccttccatacaataaatcaaatacacaatgttcaaaactttcaattttccaaaatataatc |
33599621 |
T |
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| Q |
111 |
tgcttctcatatctgatcattgaaaaagtgattatgaaaataggtttgagtt-gtgtatttatgtgaattt |
180 |
Q |
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| T |
33599622 |
tgcttcttatat-tgatcatcgaaaaagtgattccggaaatagggttgagttaatttatttatgtgaattt |
33599691 |
T |
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