View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17413_low_3 (Length: 678)

Name: NF17413_low_3
Description: NF17413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17413_low_3
NF17413_low_3
[»] chr3 (25 HSPs)
chr3 (143-548)||(25658824-25659226)
chr3 (143-548)||(25665229-25665631)
chr3 (143-548)||(25671634-25672036)
chr3 (143-548)||(25678039-25678441)
chr3 (143-548)||(25684715-25685121)
chr3 (11-143)||(25659353-25659485)
chr3 (11-143)||(25665758-25665890)
chr3 (11-143)||(25672163-25672295)
chr3 (1-143)||(25678568-25678710)
chr3 (273-537)||(13002589-13002850)
chr3 (273-537)||(31252736-31252997)
chr3 (608-664)||(25658715-25658771)
chr3 (608-664)||(25665120-25665176)
chr3 (608-664)||(25671525-25671581)
chr3 (608-664)||(25677930-25677986)
chr3 (608-664)||(25684606-25684662)
chr3 (458-500)||(27206793-27206835)
chr3 (462-532)||(31093575-31093645)
chr3 (613-650)||(13002926-13002963)
chr3 (459-512)||(16163453-16163506)
chr3 (455-552)||(27229408-27229505)
chr3 (613-654)||(31093726-31093767)
chr3 (613-654)||(16163309-16163350)
chr3 (613-650)||(31252623-31252660)
chr3 (623-655)||(27229305-27229337)
[»] scaffold0029 (3 HSPs)
scaffold0029 (277-421)||(43042-43186)
scaffold0029 (277-421)||(18030-18174)
scaffold0029 (620-654)||(18364-18398)
[»] chr2 (5 HSPs)
chr2 (277-421)||(33130018-33130162)
chr2 (277-395)||(33120275-33120393)
chr2 (311-423)||(19113241-19113353)
chr2 (620-654)||(33120609-33120643)
chr2 (620-654)||(33130352-33130386)


Alignment Details
Target: chr3 (Bit Score: 347; Significance: 0; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 143 - 548
Target Start/End: Complemental strand, 25659226 - 25658824
Alignment:
Q  143 gctaaatataggcacatctctcggtctagatttgaacattgatttccatgtgttgtaggagactagcccattgtactatatccaaccacttttggtaaaa 242  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||||    
T  25659226 gctaaatataggcacatctctcggtctagattcgaacattgatttccatgt--tgtagga-actagcccattgtactatatccaaccacttttggtaaaa 25659130  T
Q  243 tgatttatgaagtgcaacttttttcttcaccaattctaagctatattgaaaagaggagttttaagggaaggatttgcaaaagggccttcaactagtccct 342  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25659129 tgatgtatgaagtgcaacttttttcttcaccaattctaagctatattgaaaagaggagttttaagggaaggatttgcaaaagggccttcaactagtccct 25659030  T
Q  343 tcgctattaacttataagatgcttcagttaagtgcgagccatcccaatttatatattttgaagggtcggggcaaactgttgagctacccgttccacaaaa 442  Q
    | |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25659029 ttgctattaacttatatgatgcttcagttaagtgtgagccatcccaatttatatattttgaagggtcggggcaaactgttgagctacccgttccacaaaa 25658930  T
Q  443 tatttcaagattaacatggtatggtccacttcctccacaacatgctttcaaaatctcgtccttattagaaagaaaacctgcatgattaatttacaaaaaa 542  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||| ||||||||||| ||||    
T  25658929 tatttcaagattaacatggtatggtccacttcctccacaacatgctttcaaaatctcttccttatcagaaataaaacctgcatcattaatttacataaaa 25658830  T
Q  543 tgacgt 548  Q
    ||||||    
T  25658829 tgacgt 25658824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 143 - 548
Target Start/End: Complemental strand, 25665631 - 25665229
Alignment:
Q  143 gctaaatataggcacatctctcggtctagatttgaacattgatttccatgtgttgtaggagactagcccattgtactatatccaaccacttttggtaaaa 242  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||||    
T  25665631 gctaaatataggcacatctctcggtctagattcgaacattgatttccatgt--tgtagga-actagcccattgtactatatccaaccacttttggtaaaa 25665535  T
Q  243 tgatttatgaagtgcaacttttttcttcaccaattctaagctatattgaaaagaggagttttaagggaaggatttgcaaaagggccttcaactagtccct 342  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25665534 tgatgtatgaagtgcaacttttttcttcaccaattctaagctatattgaaaagaggagttttaagggaaggatttgcaaaagggccttcaactagtccct 25665435  T
Q  343 tcgctattaacttataagatgcttcagttaagtgcgagccatcccaatttatatattttgaagggtcggggcaaactgttgagctacccgttccacaaaa 442  Q
    | |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25665434 ttgctattaacttatatgatgcttcagttaagtgtgagccatcccaatttatatattttgaagggtcggggcaaactgttgagctacccgttccacaaaa 25665335  T
Q  443 tatttcaagattaacatggtatggtccacttcctccacaacatgctttcaaaatctcgtccttattagaaagaaaacctgcatgattaatttacaaaaaa 542  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||| ||||||||||| ||||    
T  25665334 tatttcaagattaacatggtatggtccacttcctccacaacatgctttcaaaatctcttccttatcagaaataaaacctgcatcattaatttacataaaa 25665235  T
Q  543 tgacgt 548  Q
    ||||||    
T  25665234 tgacgt 25665229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 143 - 548
Target Start/End: Complemental strand, 25672036 - 25671634
Alignment:
Q  143 gctaaatataggcacatctctcggtctagatttgaacattgatttccatgtgttgtaggagactagcccattgtactatatccaaccacttttggtaaaa 242  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||||    
T  25672036 gctaaatataggcacatctctcggtctagattcgaacattgatttccatgt--tgtagga-actagcccattgtactatatccaaccacttttggtaaaa 25671940  T
Q  243 tgatttatgaagtgcaacttttttcttcaccaattctaagctatattgaaaagaggagttttaagggaaggatttgcaaaagggccttcaactagtccct 342  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25671939 tgatgtatgaagtgcaacttttttcttcaccaattctaagctatattgaaaagaggagttttaagggaaggatttgcaaaagggccttcaactagtccct 25671840  T
Q  343 tcgctattaacttataagatgcttcagttaagtgcgagccatcccaatttatatattttgaagggtcggggcaaactgttgagctacccgttccacaaaa 442  Q
    | |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25671839 ttgctattaacttatatgatgcttcagttaagtgtgagccatcccaatttatatattttgaagggtcggggcaaactgttgagctacccgttccacaaaa 25671740  T
Q  443 tatttcaagattaacatggtatggtccacttcctccacaacatgctttcaaaatctcgtccttattagaaagaaaacctgcatgattaatttacaaaaaa 542  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||| ||||||||||| ||||    
T  25671739 tatttcaagattaacatggtatggtccacttcctccacaacatgctttcaaaatctcttccttatcagaaataaaacctgcatcattaatttacataaaa 25671640  T
Q  543 tgacgt 548  Q
    ||||||    
T  25671639 tgacgt 25671634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 143 - 548
Target Start/End: Complemental strand, 25678441 - 25678039
Alignment:
Q  143 gctaaatataggcacatctctcggtctagatttgaacattgatttccatgtgttgtaggagactagcccattgtactatatccaaccacttttggtaaaa 242  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||||    
T  25678441 gctaaatataggcacatctctcggtctagattcgaacattgatttccatgt--tgtagga-actagcccattgtactatatccaaccacttttggtaaaa 25678345  T
Q  243 tgatttatgaagtgcaacttttttcttcaccaattctaagctatattgaaaagaggagttttaagggaaggatttgcaaaagggccttcaactagtccct 342  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25678344 tgatgtatgaagtgcaacttttttcttcaccaattctaagctatattgaaaagaggagttttaagggaaggatttgcaaaagggccttcaactagtccct 25678245  T
Q  343 tcgctattaacttataagatgcttcagttaagtgcgagccatcccaatttatatattttgaagggtcggggcaaactgttgagctacccgttccacaaaa 442  Q
    | |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25678244 ttgctattaacttatatgatgcttcagttaagtgtgagccatcccaatttatatattttgaagggtcggggcaaactgttgagctacccgttccacaaaa 25678145  T
Q  443 tatttcaagattaacatggtatggtccacttcctccacaacatgctttcaaaatctcgtccttattagaaagaaaacctgcatgattaatttacaaaaaa 542  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||| ||||||||||| ||||    
T  25678144 tatttcaagattaacatggtatggtccacttcctccacaacatgctttcaaaatctcttccttatcagaaataaaacctgcatcattaatttacataaaa 25678045  T
Q  543 tgacgt 548  Q
    ||||||    
T  25678044 tgacgt 25678039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 143 - 548
Target Start/End: Complemental strand, 25685121 - 25684715
Alignment:
Q  143 gctaaatataggcacatctctcggtctagatttgaacattgatttccatgtgttgtaggagactagcccattgtacta---tatccaaccacttttggta 239  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||  |||||||||||||||||||||||||   |||||||||||||||||||    
T  25685121 gctaaatataggcacatctctcggtctagattcgaacattgatttccatgt--tgtaggagactagcccattgtactactatatccaaccacttttggta 25685024  T
Q  240 aaatgatttatgaagtgcaacttttttcttcaccaattctaagctatattgaaaagaggagttttaagggaaggatttgcaaaagggccttcaactagtc 339  Q
    ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25685023 aaatgatgtatgaagtgcaacttttttcttaaccaattctaagctatattgaaaagaggagttttaagggaaggatttgcaaaagggccttcaactagtc 25684924  T
Q  340 ccttcgctattaacttataagatgcttcagttaagtgcgagccatcccaatttatatattttgaagggtcggggcaaactgttgagctacccgttccaca 439  Q
    |||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25684923 cctttgctattaacttatatgatgcttcagttaagtgtgagccatcccaatttatatattttgaagggtcggggcaaactgttgagctacccgttccaca 25684824  T
Q  440 aaatatttcaagattaacatggtatggtccacttcctccacaacatgctttcaaaatctcgtccttattagaaagaaaacctgcatgattaatttacaaa 539  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||| ||||||||||| |    
T  25684823 aaatatttcaagattaacatggtatggtccacttcctccacaacatgctttcaaaatctcttccttatcagaaataaaacctgcatcattaatttacata 25684724  T
Q  540 aaatgacgt 548  Q
    |||||||||    
T  25684723 aaatgacgt 25684715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 11 - 143
Target Start/End: Complemental strand, 25659485 - 25659353
Alignment:
Q  11 atatactatgataaagtggagaaaaatctatattattcaaaaaataaagaatatcacataatacattcttttttaaagaacattgaagaatacatattgc 110  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |    
T  25659485 atatactatgataaagtggagaaaaatctatattattccaaaaataaagaatatcacataatacattattttttaaagaatattgaagaatacatatttc 25659386  T
Q  111 attcgattttcaatgataaattgttttttggag 143  Q
    |||||||||||||||||||||| ||||||||||    
T  25659385 attcgattttcaatgataaattattttttggag 25659353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 11 - 143
Target Start/End: Complemental strand, 25665890 - 25665758
Alignment:
Q  11 atatactatgataaagtggagaaaaatctatattattcaaaaaataaagaatatcacataatacattcttttttaaagaacattgaagaatacatattgc 110  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |    
T  25665890 atatactatgataaagtggagaaaaatctatattattccaaaaataaagaatatcacataatacattattttttaaagaatattgaagaatacatatttc 25665791  T
Q  111 attcgattttcaatgataaattgttttttggag 143  Q
    |||||||||||||||||||||| ||||||||||    
T  25665790 attcgattttcaatgataaattattttttggag 25665758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 11 - 143
Target Start/End: Complemental strand, 25672295 - 25672163
Alignment:
Q  11 atatactatgataaagtggagaaaaatctatattattcaaaaaataaagaatatcacataatacattcttttttaaagaacattgaagaatacatattgc 110  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |    
T  25672295 atatactatgataaagtggagaaaaatctatattattccaaaaataaagaatatcacataatacattattttttaaagaatattgaagaatacatatttc 25672196  T
Q  111 attcgattttcaatgataaattgttttttggag 143  Q
    |||||||||||||||||||||| ||||||||||    
T  25672195 attcgattttcaatgataaattattttttggag 25672163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 25678710 - 25678568
Alignment:
Q  1 agttttaatgatatactatgataaagtggagaaaaatctatattattcaaaaaataaagaatatcacataatacattcttttttaaagaacattgaagaa 100  Q
    ||||| || |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  ||||||||||| |||||||||    
T  25678710 agtttcaaagatatattatgataaagtggagaaaaatctatattattccaaaaataaagaatatcacataatacattactttttaaagaatattgaagaa 25678611  T
Q  101 tacatattgcattcgattttcaatgataaattgttttttggag 143  Q
    |||||||| ||||||||||||||||||||||| ||||||||||    
T  25678610 tacatatttcattcgattttcaatgataaattattttttggag 25678568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 273 - 537
Target Start/End: Original strand, 13002589 - 13002850
Alignment:
Q  273 caattctaagctatattgaaaagaggagttttaagggaaggatttgcaaaagggccttcaactagtcccttcgctattaacttataagatgcttcagtta 372  Q
    |||||||||||||| |||||| ||| || ||| || ||||||| ||||||||||||||| | || ||| || ||||||  ||||||||  ||||| || |    
T  13002589 caattctaagctatcttgaaaggagcaggttttagagaaggatatgcaaaagggccttcgattaatcctttagctatttgcttataagcggcttcggtaa 13002688  T
Q  373 agtgcgagccatcccaatttatatattttgaagggtcggggcaaactgttgagctacccgttccacaa-aatatttcaagattaacatggtatggtccac 471  Q
    | || |  ||||||||||||||   ||||||||| || | |||||||||||   |   |||||||||  |||| |     || |  ||| ||||||||||    
T  13002689 aatggggtccatcccaatttattagttttgaaggatcagagcaaactgttgtattcggcgttccacaccaatactc----atcatgatgatatggtccac 13002784  T
Q  472 ttcctccacaacatgctttcaaaatctcgtccttattagaaagaaaacctgcatgattaatttaca 537  Q
    ||||||||||||||||||||||||||||| |||||| ||||| ||||||||||| |||||| ||||    
T  13002785 ttcctccacaacatgctttcaaaatctcgaccttatcagaaataaaacctgcatcattaatgtaca 13002850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 273 - 537
Target Start/End: Complemental strand, 31252997 - 31252736
Alignment:
Q  273 caattctaagctatattgaaaagaggagttttaagggaaggatttgcaaaagggccttcaactagtcccttcgctattaacttataagatgcttcagtta 372  Q
    |||||||||||||| |||||| ||| || ||| || ||||||| ||||||||||||||| | || ||| || ||||||  ||||||||  ||||| || |    
T  31252997 caattctaagctatcttgaaaggagcaggttttagagaaggatatgcaaaagggccttcgattaatcctttagctatttgcttataagcggcttcggtaa 31252898  T
Q  373 agtgcgagccatcccaatttatatattttgaagggtcggggcaaactgttgagctacccgttccacaa-aatatttcaagattaacatggtatggtccac 471  Q
    | || |  ||||||||||||||   ||||||||| || | |||||||||||   |   |||||||||  |||| |     || |  ||| ||||||||||    
T  31252897 aatggggtccatcccaatttattagttttgaaggatcagagcaaactgttgtattcggcgttccacaccaatactc----atcatgatgatatggtccac 31252802  T
Q  472 ttcctccacaacatgctttcaaaatctcgtccttattagaaagaaaacctgcatgattaatttaca 537  Q
    ||||||||||||||||||||||||||||| |||||| ||||| ||||||||||| |||||| ||||    
T  31252801 ttcctccacaacatgctttcaaaatctcgaccttatcagaaataaaacctgcatcattaatgtaca 31252736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 608 - 664
Target Start/End: Complemental strand, 25658771 - 25658715
Alignment:
Q  608 agtaactccacacaccatattgttgtggtgtttgatataaacgtttgagattgttgt 664  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  25658771 agtaactcaacacaccatattgctgtggtgtttgatataaacgtttgagattgttgt 25658715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 608 - 664
Target Start/End: Complemental strand, 25665176 - 25665120
Alignment:
Q  608 agtaactccacacaccatattgttgtggtgtttgatataaacgtttgagattgttgt 664  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  25665176 agtaactcaacacaccatattgctgtggtgtttgatataaacgtttgagattgttgt 25665120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 608 - 664
Target Start/End: Complemental strand, 25671581 - 25671525
Alignment:
Q  608 agtaactccacacaccatattgttgtggtgtttgatataaacgtttgagattgttgt 664  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  25671581 agtaactcaacacaccatattgctgtggtgtttgatataaacgtttgagattgttgt 25671525  T

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Target: chr3; HSP #15
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 608 - 664
Target Start/End: Complemental strand, 25677986 - 25677930
Alignment:
Q  608 agtaactccacacaccatattgttgtggtgtttgatataaacgtttgagattgttgt 664  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  25677986 agtaactcaacacaccatattgctgtggtgtttgatataaacgtttgagattgttgt 25677930  T

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Target: chr3; HSP #16
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 608 - 664
Target Start/End: Complemental strand, 25684662 - 25684606
Alignment:
Q  608 agtaactccacacaccatattgttgtggtgtttgatataaacgtttgagattgttgt 664  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  25684662 agtaactcaacacaccatattgctgtggtgtttgatataaacgtttgagattgttgt 25684606  T

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Target: chr3; HSP #17
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 458 - 500
Target Start/End: Complemental strand, 27206835 - 27206793
Alignment:
Q  458 atggtatggtccacttcctccacaacatgctttcaaaatctcg 500  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  27206835 atggtatggtccacttcctccacaacatgctttcaaaatctcg 27206793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 462 - 532
Target Start/End: Original strand, 31093575 - 31093645
Alignment:
Q  462 tatggtccacttcctccacaacatgctttcaaaatctcgtccttattagaaagaaaacctgcatgattaat 532  Q
    ||||||||||||||||| ||||||||||||||||| ||| | |||| ||||| ||||||||||| ||||||    
T  31093575 tatggtccacttcctccgcaacatgctttcaaaatttcgactttatcagaaataaaacctgcatcattaat 31093645  T

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Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 613 - 650
Target Start/End: Original strand, 13002926 - 13002963
Alignment:
Q  613 ctccacacaccatattgttgtggtgtttgatataaacg 650  Q
    ||||||||||||||||||||||||||||||||||||||    
T  13002926 ctccacacaccatattgttgtggtgtttgatataaacg 13002963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 459 - 512
Target Start/End: Complemental strand, 16163506 - 16163453
Alignment:
Q  459 tggtatggtccacttcctccacaacatgctttcaaaatctcgtccttattagaa 512  Q
    |||||||||||| |||||||||||||||||||||||| |||| |||||| ||||    
T  16163506 tggtatggtccaattcctccacaacatgctttcaaaacctcgaccttatcagaa 16163453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 455 - 552
Target Start/End: Complemental strand, 27229505 - 27229408
Alignment:
Q  455 aacatggtatggtccacttcctccacaacatgctttcaaaatctcgtccttattagaaagaaaacctgcatgattaatttacaaaaaatgacgtacat 552  Q
    |||||||||||| |   |||||||||||||||||| || ||||| | |||||| ||||  ||| |||||||||||||| |||| ||||| | ||||||    
T  27229505 aacatggtatggccattttcctccacaacatgcttgcataatcttgaccttatcagaagtaaagcctgcatgattaatgtacataaaataatgtacat 27229408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 613 - 654
Target Start/End: Original strand, 31093726 - 31093767
Alignment:
Q  613 ctccacacaccatattgttgtggtgtttgatataaacgtttg 654  Q
    |||||| |||||||||||||||||| ||||||||||||||||    
T  31093726 ctccacgcaccatattgttgtggtgcttgatataaacgtttg 31093767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 613 - 654
Target Start/End: Complemental strand, 16163350 - 16163309
Alignment:
Q  613 ctccacacaccatattgttgtggtgtttgatataaacgtttg 654  Q
    ||||||| ||||||||||||||||| || |||||||||||||    
T  16163350 ctccacagaccatattgttgtggtgcttcatataaacgtttg 16163309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 613 - 650
Target Start/End: Complemental strand, 31252660 - 31252623
Alignment:
Q  613 ctccacacaccatattgttgtggtgtttgatataaacg 650  Q
    |||||||||||||| ||||| |||||||||||||||||    
T  31252660 ctccacacaccatactgttgaggtgtttgatataaacg 31252623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 623 - 655
Target Start/End: Complemental strand, 27229337 - 27229305
Alignment:
Q  623 catattgttgtggtgtttgatataaacgtttga 655  Q
    ||||||||||||||| |||||||||||||||||    
T  27229337 catattgttgtggtgattgatataaacgtttga 27229305  T

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Target: scaffold0029 (Bit Score: 53; Significance: 5e-21; HSPs: 3)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 277 - 421
Target Start/End: Original strand, 43042 - 43186
Alignment:
Q  277 tctaagctatattgaaaagaggagttttaagggaaggatttgcaaaagggccttcaactagtcccttcgctattaacttataagatgcttcagttaagtg 376  Q
    |||||||||| ||||||||||| | |||||| |||||||||| ||| || || |||||||| || || ||||||| |||||||| ||||||||| |||||    
T  43042 tctaagctattttgaaaagaggggatttaagagaaggatttgaaaatggaccctcaactagcccttttgctattagcttataagctgcttcagtaaagtg 43141  T
Q  377 cgagccatcccaatttatatattttgaagggtcggggcaaactgt 421  Q
     |  || ||||||||||||  ||||||||| || | |||||||||    
T  43142 tggtccgtcccaatttatacgttttgaaggatcagagcaaactgt 43186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 277 - 421
Target Start/End: Original strand, 18030 - 18174
Alignment:
Q  277 tctaagctatattgaaaagaggagttttaagggaaggatttgcaaaagggccttcaactagtcccttcgctattaacttataagatgcttcagttaagtg 376  Q
    |||||||||| ||||||||||| |  ||||| |||||||||| ||| || || |||||||| || || ||||||| |||||||| ||||||||| |||||    
T  18030 tctaagctattttgaaaagaggggacttaagagaaggatttgaaaatggaccctcaactagcccttttgctattagcttataagctgcttcagtaaagtg 18129  T
Q  377 cgagccatcccaatttatatattttgaagggtcggggcaaactgt 421  Q
     |  || ||||||||||||  ||||||||| || | |||||||||    
T  18130 tggtccgtcccaatttatacgttttgaaggatcagagcaaactgt 18174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 620 - 654
Target Start/End: Original strand, 18364 - 18398
Alignment:
Q  620 caccatattgttgtggtgtttgatataaacgtttg 654  Q
    ||||||||||||| |||||||||||||||||||||    
T  18364 caccatattgttgcggtgtttgatataaacgtttg 18398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 5e-21; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 277 - 421
Target Start/End: Original strand, 33130018 - 33130162
Alignment:
Q  277 tctaagctatattgaaaagaggagttttaagggaaggatttgcaaaagggccttcaactagtcccttcgctattaacttataagatgcttcagttaagtg 376  Q
    |||||||||| ||||||||||| | |||||| |||||||||| ||| || || |||||||| || || ||||||| |||||||| ||||||||| |||||    
T  33130018 tctaagctattttgaaaagaggggatttaagagaaggatttgaaaatggaccctcaactagcccttttgctattagcttataagctgcttcagtaaagtg 33130117  T
Q  377 cgagccatcccaatttatatattttgaagggtcggggcaaactgt 421  Q
     |  || ||||||||||||  ||||||||| || | |||||||||    
T  33130118 aggtccgtcccaatttatacgttttgaaggatcagagcaaactgt 33130162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 277 - 395
Target Start/End: Original strand, 33120275 - 33120393
Alignment:
Q  277 tctaagctatattgaaaagaggagttttaagggaaggatttgcaaaagggccttcaactagtcccttcgctattaacttataagatgcttcagttaagtg 376  Q
    |||||||||| ||||||||||| | |||||| |||||||||| ||| || || |||||||| || || ||||||| |||||||| ||||||||| |||||    
T  33120275 tctaagctattttgaaaagaggggatttaagagaaggatttgaaaatggaccctcaactagcccttttgctattagcttataagctgcttcagtaaagtg 33120374  T
Q  377 cgagccatcccaatttata 395  Q
     |  || ||||||||||||    
T  33120375 aggtccgtcccaatttata 33120393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 311 - 423
Target Start/End: Complemental strand, 19113353 - 19113241
Alignment:
Q  311 aggatttgcaaaagggccttcaactagtcccttcgctattaacttataagatgcttcagttaagtgcgagccatcccaatttatatattttgaagggtcg 410  Q
    ||||||||||||||| |||||||||||||| || ||||||  | |||| | |||||| || | ||| |  |||||||||||||||||||| |||||||||    
T  19113353 aggatttgcaaaaggaccttcaactagtccttttgctatttgcctatatgctgcttctgtaaggtggggtccatcccaatttatatatttagaagggtcg 19113254  T
Q  411 gggcaaactgttg 423  Q
    | |||||| ||||    
T  19113253 gagcaaacagttg 19113241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 620 - 654
Target Start/End: Original strand, 33120609 - 33120643
Alignment:
Q  620 caccatattgttgtggtgtttgatataaacgtttg 654  Q
    ||||||||||||| |||||||||||||||||||||    
T  33120609 caccatattgttgcggtgtttgatataaacgtttg 33120643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 620 - 654
Target Start/End: Original strand, 33130352 - 33130386
Alignment:
Q  620 caccatattgttgtggtgtttgatataaacgtttg 654  Q
    ||||||||||||| |||||||||||||||||||||    
T  33130352 caccatattgttgcggtgtttgatataaacgtttg 33130386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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