View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17413_low_31 (Length: 201)

Name: NF17413_low_31
Description: NF17413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17413_low_31
NF17413_low_31
[»] chr2 (12 HSPs)
chr2 (15-185)||(8395532-8395702)
chr2 (15-185)||(8405870-8406040)
chr2 (15-184)||(8375849-8376018)
chr2 (15-184)||(8439085-8439254)
chr2 (26-185)||(8431126-8431285)
chr2 (15-185)||(8411987-8412157)
chr2 (15-185)||(8434085-8434255)
chr2 (15-185)||(8417205-8417375)
chr2 (57-185)||(8417068-8417196)
chr2 (120-176)||(8368247-8368303)
chr2 (120-176)||(8401107-8401163)
chr2 (120-176)||(8422684-8422740)
[»] chr4 (2 HSPs)
chr4 (21-175)||(55336242-55336396)
chr4 (18-178)||(55330801-55330961)


Alignment Details
Target: chr2 (Bit Score: 155; Significance: 2e-82; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 15 - 185
Target Start/End: Original strand, 8395532 - 8395702
Alignment:
Q  15 atgaataatggatggagtgaagaattggaaatggaaatgagagaagttgttgacgtggtaaaaagaaaagacgctgaagattatgacagacttggaaata 114  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |    
T  8395532 atgaataatggatggagtgaagaattggaaatggaaatgagggaagttgttgacgtggtaaaacgaaaagacgctgaagattatgacagacttggaaaca 8395631  T
Q  115 tagctttgaaggtaaacaagagtttggcaattgcagggccattactcacaggaattgcagctattggatct 185  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  8395632 tagctttgaaggtaaacaagagtttggcaattgcagggccattgctcacaggaattgcagctattggatct 8395702  T

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Target: chr2; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 15 - 185
Target Start/End: Complemental strand, 8406040 - 8405870
Alignment:
Q  15 atgaataatggatggagtgaagaattggaaatggaaatgagagaagttgttgacgtggtaaaaagaaaagacgctgaagattatgacagacttggaaata 114  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |    
T  8406040 atgaataatggatggagtgaagaattggaaatggaaatgagggaagttgttgacgtggtaaaacgaaaagacgctgaagattatgacagacttggaaaca 8405941  T
Q  115 tagctttgaaggtaaacaagagtttggcaattgcagggccattactcacaggaattgcagctattggatct 185  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  8405940 tagctttgaaggtaaacaagagtttggcaattgcagggccattgctcacaggaattgcagctattggatct 8405870  T

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Target: chr2; HSP #3
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 15 - 184
Target Start/End: Original strand, 8375849 - 8376018
Alignment:
Q  15 atgaataatggatggagtgaagaattggaaatggaaatgagagaagttgttgacgtggtaaaaagaaaagacgctgaagattatgacagacttggaaata 114  Q
    ||||||||||| |||||| |||||||||||||||||||||| ||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||| |    
T  8375849 atgaataatgggtggagtaaagaattggaaatggaaatgagggaagttgttgaagtgataaagagaaaagacgctgaagattatgacagacttggaaaca 8375948  T
Q  115 tagctttgaaggtaaacaagagtttggcaattgcagggccattactcacaggaattgcagctattggatc 184  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  8375949 tagcattgaaggtaaacaagagtttggcaattgcagggccattgctcacaggaattgcagctattggatc 8376018  T

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Target: chr2; HSP #4
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 15 - 184
Target Start/End: Complemental strand, 8439254 - 8439085
Alignment:
Q  15 atgaataatggatggagtgaagaattggaaatggaaatgagagaagttgttgacgtggtaaaaagaaaagacgctgaagattatgacagacttggaaata 114  Q
    ||||||||||| |||||| |||||||||||||||||||||| ||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||| |    
T  8439254 atgaataatgggtggagtaaagaattggaaatggaaatgagggaagttgttgaagtgataaagagaaaagacgctgaagattatgacagacttggaaaca 8439155  T
Q  115 tagctttgaaggtaaacaagagtttggcaattgcagggccattactcacaggaattgcagctattggatc 184  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  8439154 tagcattgaaggtaaacaagagtttggcaattgcagggccattgctcacaggaattgcagctattggatc 8439085  T

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Target: chr2; HSP #5
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 26 - 185
Target Start/End: Complemental strand, 8431285 - 8431126
Alignment:
Q  26 atggagtgaagaattggaaatggaaatgagagaagttgttgacgtggtaaaaagaaaagacgctgaagattatgacagacttggaaatatagctttgaag 125  Q
    ||||||||||||||| |||||||||||||| || |||||||| ||| |||| |||||||||| |||||||||||| ||||||||||| ||||| ||||||    
T  8431285 atggagtgaagaattagaaatggaaatgagggatgttgttgaagtgataaagagaaaagacgttgaagattatgatagacttggaaacatagcattgaag 8431186  T
Q  126 gtaaacaagagtttggcaattgcagggccattactcacaggaattgcagctattggatct 185  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||    
T  8431185 gtaaacaagagtttggcaattgcagggccattactctcaggaattgcagctataggatct 8431126  T

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Target: chr2; HSP #6
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 15 - 185
Target Start/End: Complemental strand, 8412157 - 8411987
Alignment:
Q  15 atgaataatggatggagtgaagaattggaaatggaaatgagagaagttgttgacgtggtaaaaagaaaagacgctgaagattatgacagacttggaaata 114  Q
    ||||| |||||||||||||||||||| ||||||||||||   ||||| | ||| ||| | || ||||||||  ||||||||||||||||||||||||| |    
T  8412157 atgaacaatggatggagtgaagaattagaaatggaaatgcaggaagtcgctgaagtgatcaagagaaaagattctgaagattatgacagacttggaaaca 8412058  T
Q  115 tagctttgaaggtaaacaagagtttggcaattgcagggccattactcacaggaattgcagctattggatct 185  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  8412057 tagcgttgaaggtaaacaagagtttggcaattgcagggccattactcacaggaattgcagcaattggatct 8411987  T

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Target: chr2; HSP #7
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 15 - 185
Target Start/End: Complemental strand, 8434255 - 8434085
Alignment:
Q  15 atgaataatggatggagtgaagaattggaaatggaaatgagagaagttgttgacgtggtaaaaagaaaagacgctgaagattatgacagacttggaaata 114  Q
    ||||| |||||||||||||||||||| ||||||||||||   ||||| | ||| ||| | || ||||||||  ||||||||||||||||||||||||| |    
T  8434255 atgaacaatggatggagtgaagaattagaaatggaaatgcaggaagtcgctgaagtgatcaagagaaaagattctgaagattatgacagacttggaaaca 8434156  T
Q  115 tagctttgaaggtaaacaagagtttggcaattgcagggccattactcacaggaattgcagctattggatct 185  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  8434155 tagcgttgaaggtaaacaagagtttggcaattgcagggccattactcacaggaattgcagcaattggatct 8434085  T

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Target: chr2; HSP #8
Raw Score: 99; E-Value: 4e-49
Query Start/End: Original strand, 15 - 185
Target Start/End: Complemental strand, 8417375 - 8417205
Alignment:
Q  15 atgaataatggatggagtgaagaattggaaatggaaatgagagaagttgttgacgtggtaaaaagaaaagacgctgaagattatgacagacttggaaata 114  Q
    ||||| || ||||||||| ||||||| ||||||||||||   ||||| | ||| ||| | || ||||||||  ||||||||||||||||||||||||| |    
T  8417375 atgaacaacggatggagtaaagaattagaaatggaaatgcaggaagtcgctgaagtgatcaagagaaaagattctgaagattatgacagacttggaaaca 8417276  T
Q  115 tagctttgaaggtaaacaagagtttggcaattgcagggccattactcacaggaattgcagctattggatct 185  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  8417275 tagcgttgaaggtaaacaagagtttggcaattgcagggccattactcacaggaattgcagcaattggatct 8417205  T

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Target: chr2; HSP #9
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 57 - 185
Target Start/End: Complemental strand, 8417196 - 8417068
Alignment:
Q  57 gaagttgttgacgtggtaaaaagaaaagacgctgaagattatgacagacttggaaatatagctttgaaggtaaacaagagtttggcaattgcagggccat 156  Q
    ||||||||||| ||| |||| |||||||| |||||||||||| |||| |||||||| ||||||||||||||| |||||||||| ||||||||||||||||    
T  8417196 gaagttgttgaagtgataaagagaaaagatgctgaagattataacaggcttggaaacatagctttgaaggtagacaagagtttagcaattgcagggccat 8417097  T
Q  157 tactcacaggaattgcagctattggatct 185  Q
    |||||||||||||||| ||||||||||||    
T  8417096 tactcacaggaattgccgctattggatct 8417068  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 176
Target Start/End: Complemental strand, 8368303 - 8368247
Alignment:
Q  120 ttgaaggtaaacaagagtttggcaattgcagggccattactcacaggaattgcagct 176  Q
    |||||| |||| ||||  ||||| |||||||| ||||||||||| ||||||||||||    
T  8368303 ttgaagataaataagacattggctattgcaggaccattactcactggaattgcagct 8368247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 176
Target Start/End: Original strand, 8401107 - 8401163
Alignment:
Q  120 ttgaaggtaaacaagagtttggcaattgcagggccattactcacaggaattgcagct 176  Q
    |||||| |||| ||||  ||||| |||||||| ||||||||||| ||||||||||||    
T  8401107 ttgaagataaataagacattggctattgcaggaccattactcactggaattgcagct 8401163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 176
Target Start/End: Original strand, 8422684 - 8422740
Alignment:
Q  120 ttgaaggtaaacaagagtttggcaattgcagggccattactcacaggaattgcagct 176  Q
    |||||| |||| ||||  ||||| |||||||| ||||||||||| ||||||||||||    
T  8422684 ttgaagataaataagacattggctattgcaggaccattactcactggaattgcagct 8422740  T

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Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 21 - 175
Target Start/End: Complemental strand, 55336396 - 55336242
Alignment:
Q  21 aatggatggagtgaagaattggaaatggaaatgagagaagttgttgacgtggtaaaaagaaaagacgctgaagattatgacagacttggaaatatagctt 120  Q
    |||||||||||||||||||| |||||||||||||| |||||| |||| || ||||| || ||||||  |||||| ||||| ||||||||||||||||| |    
T  55336396 aatggatggagtgaagaattagaaatggaaatgagggaagttattgaagttgtaaagagtaaagacattgaagactatgagagacttggaaatatagcat 55336297  T
Q  121 tgaaggtaaacaagagtttggcaattgcagggccattactcacaggaattgcagc 175  Q
    ||||| | ||||||||| ||||||| ||||| ||||||||||| |||||||||||    
T  55336296 tgaagattaacaagagtatggcaatagcaggtccattactcactggaattgcagc 55336242  T

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Target: chr4; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 18 - 178
Target Start/End: Complemental strand, 55330961 - 55330801
Alignment:
Q  18 aataatggatggagtgaagaattggaaatggaaatgagagaagttgttgacgtggtaaaaagaaaagacgctgaagattatgacagacttggaaatatag 117  Q
    ||||||||||||||||| ||||| |||| |||| ||||||||||| |||| || || ||||  |||||   |||||||||||| ||||||||||||||||    
T  55330961 aataatggatggagtgaggaattagaaaaggaattgagagaagttattgaagttgtgaaaatgaaagatattgaagattatgaaagacttggaaatatag 55330862  T
Q  118 ctttgaaggtaaacaagagtttggcaattgcagggccattactcacaggaattgcagctat 178  Q
    | || ||||| || |||||||| |||| ||| || ||||||||||| ||||||||||||||    
T  55330861 cattaaaggttaataagagtttagcaactgctggtccattactcactggaattgcagctat 55330801  T

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