View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17413_low_4 (Length: 660)
Name: NF17413_low_4
Description: NF17413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17413_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 546; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 546; E-Value: 0
Query Start/End: Original strand, 16 - 643
Target Start/End: Complemental strand, 243289 - 242650
Alignment:
| Q |
16 |
atactacgctaatctcttaattaatgtgaaaaacagcttaatcaatcatgccagacaacgttaagtacataggttttcaaacacttgcgagaaatcggtt |
115 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
243289 |
atactacgctaatctcttaattaacgtgaaaaacagcttaatcaatcatgccagacaacgttaagtacataggttttcaaacacttgcgagaaatcggtt |
243190 |
T |
|
| Q |
116 |
tcatcctgataaaaaatggagcaatcccgaacaaataacaacatcatcatctcaaaaaagaggcttgatagagtagagtaggccgatatgcaaatttaaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
243189 |
tcatcctgataaaaaatggagcaatcccgaacaaataacaacatcatcatctcaaaaaagaggcttgatagagtagagtaggccgatatgcaaatttaaa |
243090 |
T |
|
| Q |
216 |
actccacaaattctgcaaagaaaccaaaattgaaataactctatccactaccatgaactagtaacaatcattcatggcaaaaacaaatacctccaataaa |
315 |
Q |
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|
||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
243089 |
actccacaaattctgtaaagaaaccaaaattgaaataaccctatccactaccatgaactagtaacaatcattcatggcaaaaacaaatacctccaataaa |
242990 |
T |
|
| Q |
316 |
gcatcatatgaccctccctgcttcacaaaacttaggacaagttgtagaaacccaccctggaaccttaatcctctagtagcaatcagatcctcggaa-ttc |
414 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
242989 |
gcatcaaatgaccctccctgcttcacaaaacttaggacaagttgcagaaacccaccctggaaccttaatcctctagtagcaatcagatcctcggaatttc |
242890 |
T |
|
| Q |
415 |
actaataaaa-----------ttgcactatgcttaaaaagagagcaaagtatgaaaaggctgaccagtagtacaaactacacacacatttaagtcaactg |
503 |
Q |
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|||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
242889 |
actaataaaatttattctaggttgcactatgcttaaaaagggagcaaagtatgaaaaggctgaccagtagtacgaactacacacacatttaagtcaactg |
242790 |
T |
|
| Q |
504 |
ttaagtctatacacacacatctgagcaatgctcttgaatcgacaaatatatacatctgc--atttgtattaagttaactgcttcctcagtcgcataattt |
601 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
242789 |
ttaagtctat--acacacatctgagcaatgctcttgaatcgacaaatatatacatctgcatatttgtattaagttaactgcttcctcagtcgcataattt |
242692 |
T |
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| Q |
602 |
ggatgatccagtgccaattcaagtctgttattatacagattt |
643 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
242691 |
ggatgatccagtgccaattcaagtctgttattatacagattt |
242650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 93; Significance: 6e-45; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 266 - 382
Target Start/End: Complemental strand, 6908745 - 6908629
Alignment:
| Q |
266 |
ccatgaactagtaacaatcattcatggcaaaaacaaatacctccaataaagcatcatatgaccctccctgcttcacaaaacttaggacaagttgtagaaa |
365 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||| ||||||||||||||| |||||||||||||| |
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| T |
6908745 |
ccatgaactagtaacaatcattcatggcaaaaacaagtacctccaataaagcatctgatgatcctccctacttcacaaaacttagaacaagttgtagaaa |
6908646 |
T |
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| Q |
366 |
cccaccctggaacctta |
382 |
Q |
| |
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||||||||||||||||| |
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| T |
6908645 |
cccaccctggaacctta |
6908629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 529 - 607
Target Start/End: Complemental strand, 6908399 - 6908317
Alignment:
| Q |
529 |
caatgctcttgaatcgacaaatatatacatctgcatttgtat----taagttaactgcttcctcagtcgcataatttggatga |
607 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||| |||||||||||||| |
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| T |
6908399 |
caatgctcttgaatcgacaaatatatacatctgtgtttgtattgagtaagttaactgctttctcagtcacataatttggatga |
6908317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 31 - 131
Target Start/End: Complemental strand, 6908957 - 6908854
Alignment:
| Q |
31 |
cttaattaatgtgaaaaacagcttaatcaatcatgccagacaacgtt---aagtacataggttttcaaacacttgcgagaaatcggtttcatcctgataa |
127 |
Q |
| |
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|||||| || || |||| |||||||||||||||||||| |||||||| ||||||||| ||||||||||||| |||||||| || ||||||||||||| |
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| T |
6908957 |
cttaatgaaggtaaaaagcagcttaatcaatcatgccaaacaacgtttttaagtacataagttttcaaacactaacgagaaattggattcatcctgataa |
6908858 |
T |
|
| Q |
128 |
aaaa |
131 |
Q |
| |
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|||| |
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| T |
6908857 |
aaaa |
6908854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 595 - 643
Target Start/End: Complemental strand, 6928642 - 6928594
Alignment:
| Q |
595 |
ataatttggatgatccagtgccaattcaagtctgttattatacagattt |
643 |
Q |
| |
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||||||||||||||||| | |||| ||||||||||||||||| |||||| |
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| T |
6928642 |
ataatttggatgatccaataccaaatcaagtctgttattataaagattt |
6928594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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