View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17413_low_5 (Length: 575)
Name: NF17413_low_5
Description: NF17413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17413_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 490; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 13 - 559
Target Start/End: Original strand, 51877713 - 51878255
Alignment:
| Q |
13 |
aatatattgaataacattatcttttacaagacctaattttgtacgatatacaattttatatatgaaaatgctaatgagttttctaattgcactccataag |
112 |
Q |
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| T |
51877713 |
aatatattgaataacattatcttttacaagatctaattttgtacgatatacaattttatatatggaaatgctaacgagttttctaattgtaatccttaag |
51877812 |
T |
|
| Q |
113 |
gactttatatagtaagtttggtcaatataaacatgcagtccgtattcaagttgatttcttgaaatatgaccagagatcatatatataggaagaaaagaaa |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |
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| T |
51877813 |
aactttatatagtaagtttggtcaatataaacatgcagtccgtattcaagttgatttcttgaaatatgcccagagatcatat----aggaagaaaagaaa |
51877908 |
T |
|
| Q |
213 |
cttattaaagaatggtcattagtctaaatgtttttctaatttggtgaatgcgtatattccactctacatattgtttcttcttttctgatcacactaggaa |
312 |
Q |
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| T |
51877909 |
cttattaaagaatggtcattagtctaaatgtttttctaatttggtgaatgcgtatattccactctacatattgtttcttcttttctgatcacactaggaa |
51878008 |
T |
|
| Q |
313 |
actccttgcaactttaataataccttatacaatcaaatacaatggaataccaaatgtcatactccattatcttcaattccctacaaaacagtatcactaa |
412 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
51878009 |
actccttgcaactttaataataccgtatacaatcaaatacaatggaataccaaatgtcatactccattatcttcaattccctacaaaactgtatcactaa |
51878108 |
T |
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| Q |
413 |
tcctcctttctcttccttcccattaaccagatcaaattggcatgaccataaaagtcacaaacgggtccctccatttataggacaccaattctcttaaact |
512 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51878109 |
tcctcctttctcttccttcccattaaccagatcaaattggcatgaccataaaagtcacaaacgggtccctccatttataggacaccaattctcttaaact |
51878208 |
T |
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| Q |
513 |
gtaaaagtaaaaccatgtcataagttgattacattatgagtaatttg |
559 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51878209 |
gtaaaagtaaaaccatgtcataagttgattacattatgagtaatttg |
51878255 |
T |
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