View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17413_low_7 (Length: 489)
Name: NF17413_low_7
Description: NF17413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17413_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 138; Significance: 6e-72; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 337 - 474
Target Start/End: Complemental strand, 7059459 - 7059322
Alignment:
| Q |
337 |
gatctgatatcaatgcagctgaaaacgacccttcactagttgcaatcaatagacagcaagacttctcagaaaaccaagcaatgcaatccacaaccaccat |
436 |
Q |
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| T |
7059459 |
gatctgatatcaatgcagctgaaaacgacccttcactagttgcaatcaatagacagcaagacttctcagaaaaccaagcaatgcaatccacaaccaccat |
7059360 |
T |
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| Q |
437 |
aaacaccaccgtctctgaggtggtggttccaccctttg |
474 |
Q |
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| T |
7059359 |
aaacaccaccgtctctgaggtggtggttccaccctttg |
7059322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 133 - 245
Target Start/End: Complemental strand, 7059663 - 7059551
Alignment:
| Q |
133 |
aggtatcaaactggttcataaatgccagggttagattgtggaaacctatggtagaagagatgtaccaacaagaacttaatgaagcagaggttgaagcaga |
232 |
Q |
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| T |
7059663 |
aggtatcaaactggttcataaatgccagggttagattgtggaaacctatggtagaagagatgtaccaacaagaacttaatgaagcagaggttgaagcaga |
7059564 |
T |
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| Q |
233 |
agacagagaaatg |
245 |
Q |
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| T |
7059563 |
agacagagaaatg |
7059551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 7059772 - 7059686
Alignment:
| Q |
18 |
tatttcacataatgtgaaaatgtaaaactccactagtgtatgaattatctatgtattgtgttgaatggtttgaatgtgatgttactg |
104 |
Q |
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| T |
7059772 |
tatttcacataatgtgaaaatgtaaaactccactagtgtatgaattatctatgtattgtgttgaatggtttgaatgtgatgttactg |
7059686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 9e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 133 - 220
Target Start/End: Original strand, 33462837 - 33462924
Alignment:
| Q |
133 |
aggtatcaaactggttcataaatgccagggttagattgtggaaacctatggtagaagagatgtaccaacaagaacttaatgaagcaga |
220 |
Q |
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| T |
33462837 |
aggtatcaaactggttcattaatgctagggttcgattgtggaaacccatggtagaagatatgtaccaacaagaacttaaagaagcaga |
33462924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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