View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17413_low_9 (Length: 399)
Name: NF17413_low_9
Description: NF17413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17413_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 172; Significance: 3e-92; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 206 - 381
Target Start/End: Complemental strand, 42842151 - 42841976
Alignment:
| Q |
206 |
gtttttgctcactggtgataattattcatgtgttttatcaaggtaattgtgttagaacttgaaacttccttttgtttaacatgtattaatttctgattag |
305 |
Q |
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| T |
42842151 |
gtttttgctcactggtgataattattcatgtgttttatcaaggtaattgtgttagaacttgaaacttccttttgtttaacatgtattaatttctgattag |
42842052 |
T |
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| Q |
306 |
gaatgctctatattctaactaccataagctcaacatagccacataaactactacaaacgaagcccattgcgcaaaa |
381 |
Q |
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| T |
42842051 |
gaatgctctatattctaactaccataagctcaacatagccacataaactactacaaacgaagcacattgcgcaaaa |
42841976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 16 - 127
Target Start/End: Complemental strand, 42842417 - 42842306
Alignment:
| Q |
16 |
atgctagaggtagggaaattactatcttagtactatttatgctcaaatggagctcgaggcaatattatgatgtccacgatctaggattcaatagtggcct |
115 |
Q |
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| T |
42842417 |
atgctagaggtagggaaagtactatcttagtactatttatgctcaaatggggctcgaggcaatattatgatgtccacggcctaggaatcaatagtggcct |
42842318 |
T |
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| Q |
116 |
gaaaaaattatt |
127 |
Q |
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| T |
42842317 |
gaaaaaattatt |
42842306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 223 - 366
Target Start/End: Original strand, 42841732 - 42841869
Alignment:
| Q |
223 |
ataattattcatgtgttttatcaaggtaattgtgttagaacttgaaacttccttttgtttaacatgtattaatttctgattaggaatgctctatattcta |
322 |
Q |
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| T |
42841732 |
ataattgttcatgtgttttatccacgtaattgtgtcagaacttgaaactgccttttgtttagcatgtagcaatttatgactaggaatgctctatattcta |
42841831 |
T |
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| Q |
323 |
actaccataagctcaacatagccacataaactactacaaacgaa |
366 |
Q |
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| T |
42841832 |
actaccataag------ttagccacataaactactgcaaacgaa |
42841869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 130 - 168
Target Start/End: Complemental strand, 42842187 - 42842149
Alignment:
| Q |
130 |
ttttggattatactcttttgatcttttttacctatcgtt |
168 |
Q |
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| T |
42842187 |
ttttggagtatactcttttgatctcttttacctatcgtt |
42842149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 298 - 357
Target Start/End: Original strand, 33221864 - 33221923
Alignment:
| Q |
298 |
ctgattaggaatgctctatattctaactaccataagctcaacatagccacataaactact |
357 |
Q |
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| T |
33221864 |
ctgactaggaatgctctagattctaactgccagaagcttaacacagccacataaactact |
33221923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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