View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17414_low_1 (Length: 339)
Name: NF17414_low_1
Description: NF17414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17414_low_1 |
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| [»] scaffold0555 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 6 - 323
Target Start/End: Original strand, 19138716 - 19139021
Alignment:
| Q |
6 |
gcagaacctgtgaataaattatggtttaactgatcctgagagttgtcgctgacttaaaatcttgacacgatcctatgaataaatgatgctttaattgtga |
105 |
Q |
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| T |
19138716 |
gcagaacctacgaataaattatggtttaactgaacctgagagttgtcacagacttaaaatcttgacacgattctatgaataaatgatgctttaattgtga |
19138815 |
T |
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| Q |
106 |
taataaattaacgtccgaaaaaaccttcaaagaatactagctaacctatggaattaggaagttgtaacctttgaagagaactctcattcaaggaattgat |
205 |
Q |
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| T |
19138816 |
taataaattaacgtccgaaaaaaccttcaaagaatactagctcacctatggaattaggaagttgtaacctttgaagagaactctaattcaaggaattgat |
19138915 |
T |
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| Q |
206 |
aaggggtaannnnnnnaatcattgtaaaactagtggaacattattatgggtagttgtagactacaatttaaacttaatgcacctttattgcttttaaaat |
305 |
Q |
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| T |
19138916 |
aaagggtaatttttttaatcattgtaaaa------------tattatgggtagttgtagactacaatttaaacttaatgcacctttatcgcttttaaaat |
19139003 |
T |
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| Q |
306 |
atgtcgaaagacgccaca |
323 |
Q |
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| T |
19139004 |
ctgtcgaaagacgccaca |
19139021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 269 - 323
Target Start/End: Original strand, 1177386 - 1177440
Alignment:
| Q |
269 |
caatttaaacttaatgcacctttattgcttttaaaatatgtcgaaagacgccaca |
323 |
Q |
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| T |
1177386 |
caatttaaacttaatgcacctttatcgcttttaaaacctgtcgaaagacgccaca |
1177440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 323
Target Start/End: Complemental strand, 16177265 - 16177211
Alignment:
| Q |
269 |
caatttaaacttaatgcacctttattgcttttaaaatatgtcgaaagacgccaca |
323 |
Q |
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| T |
16177265 |
caatttaaacttaatgcacctttatcgcatttaaaacctgttgaaagacaccaca |
16177211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 269 - 323
Target Start/End: Original strand, 23540388 - 23540442
Alignment:
| Q |
269 |
caatttaaacttaatgcacctttattgcttttaaaatatgtcgaaagacgccaca |
323 |
Q |
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| T |
23540388 |
caatttaaacttattgcatctttatcgcttttaaaacctgtcgaaagacgccaca |
23540442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 269 - 323
Target Start/End: Complemental strand, 20146185 - 20146131
Alignment:
| Q |
269 |
caatttaaacttaatgcacctttattgcttttaaaatatgtcgaaagacgccaca |
323 |
Q |
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| T |
20146185 |
caatttaaacttaatgcacctttatcgcttttaaaacctgtcgaaatactccaca |
20146131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0555 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0555
Description:
Target: scaffold0555; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 269 - 318
Target Start/End: Original strand, 5835 - 5884
Alignment:
| Q |
269 |
caatttaaacttaatgcacctttattgcttttaaaatatgtcgaaagacg |
318 |
Q |
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| T |
5835 |
caatttaaacttaatgcacctttatcacttttaaaacctgtcgaaagacg |
5884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 163
Target Start/End: Original strand, 35412565 - 35412603
Alignment:
| Q |
125 |
aaaaccttcaaagaatactagctaacctatggaattagg |
163 |
Q |
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| T |
35412565 |
aaaaccttcaaagaatattagctaacctaaggaattagg |
35412603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 128
Target Start/End: Complemental strand, 7639753 - 7639712
Alignment:
| Q |
87 |
aatgatgctttaattgtgataataaattaacgtccgaaaaaa |
128 |
Q |
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| T |
7639753 |
aatgatgatttaattgttataataaattaacgtcggaaaaaa |
7639712 |
T |
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