View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17414_low_2 (Length: 227)
Name: NF17414_low_2
Description: NF17414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17414_low_2 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 5 - 227
Target Start/End: Complemental strand, 44072554 - 44072332
Alignment:
| Q |
5 |
caatttttacgtcatttcacttcacctaatttagatgtagattagacaacaaaacaggcgaatgccacaaaaaatacgtggattcctgtgaatctaaggg |
104 |
Q |
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| T |
44072554 |
caatttttacgtcatttcacttcacctaatttagatgtagattagacaacaaaacaggcgaatgccacaaaaaaaacgtgggttcctgtgaatctaaggg |
44072455 |
T |
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| Q |
105 |
agaaattccacgctggcaatccgtgccttactctgttgaccaataaacgcaaagcttgggataccacaaaacgcnnnnnnntatttggttttcccgccaa |
204 |
Q |
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| T |
44072454 |
agaaattccacgctggcaatccgtgccttactctgttgaccaataaacgcaaagcttgggataccacaaaacgcaaaaaaatatttggttttcccgccaa |
44072355 |
T |
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| Q |
205 |
tggaagtgccaggctggcgatcc |
227 |
Q |
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| T |
44072354 |
tggaagtgccacgctggcgatcc |
44072332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 148
Target Start/End: Original strand, 47038959 - 47038995
Alignment:
| Q |
112 |
ccacgctggcaatccgtgccttactctgttgaccaat |
148 |
Q |
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| T |
47038959 |
ccacgctggcgatccgtgccttactctattgaccaat |
47038995 |
T |
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