View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17415_high_3 (Length: 446)
Name: NF17415_high_3
Description: NF17415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17415_high_3 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 425; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 10 - 446
Target Start/End: Complemental strand, 7756078 - 7755643
Alignment:
| Q |
10 |
catcatcatgtagaccgtttctttgtaatcccgcattcttctgacttttgaagctccacacttcatttaaaacttaaaccattctacaattttacacata |
109 |
Q |
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| T |
7756078 |
catcatcatgtagaccgtttctttgtaatcccgcattcttctgacttttgaagctccacacttcatttaaaacttaaaccattctacaattttacacata |
7755979 |
T |
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| Q |
110 |
aacctcaaaactcaaaattaaaacttcaccataatcttcatcaatggcaaatcactacgaagatttcactcacgatgtttttctgagtttcagaggcgga |
209 |
Q |
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| T |
7755978 |
aacctcaaaactcaaaattaaa-cttcaccataatcttcatcaatggcaaatcactacgaagatttcactcacgatgtttttctgagtttcagaggcgga |
7755880 |
T |
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| Q |
210 |
acacgctactctttcaccgatcatctctaccgttcacttctccgtcaaggaatcaacgttttcagagacgaccaaaacctcaagatcggccatgaaatcg |
309 |
Q |
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| T |
7755879 |
acacgctactctttcaccgatcatctctaccgttcacttctccgtcaaggaatcaacgttttcagagacgaccaaaacctcaagatcggccatgaaatcg |
7755780 |
T |
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| Q |
310 |
gaccttcactcctacaagcaatcgaagcttctagaatctcaatcgttgtgctgtgtaaagactatgcttcttcaacttggtgccttgatgaacttgttaa |
409 |
Q |
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| T |
7755779 |
gaccttcactcctacaagcaatcgaagcttctagaatctcaatcgttgtgctgtgtaaagaatatgcttcttcaacttggtgccttgatgaacttgttaa |
7755680 |
T |
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| Q |
410 |
gatcgttgactgttatgaaaataatggaaaatcggtt |
446 |
Q |
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| T |
7755679 |
gatcgttgactgttatgaaaataatggaaaatcggtt |
7755643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 166 - 424
Target Start/End: Complemental strand, 7840050 - 7839792
Alignment:
| Q |
166 |
acgaagatttcactcacgatgtttttctgagtttcagaggcggaacacgctactctttcaccgatcatctctaccgttcacttctccgtcaaggaatcaa |
265 |
Q |
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| T |
7840050 |
acgaagacttcactcacgacgttttcctcagtttcagaggcagaactcgctactccttcaccgatcatctctaccgttcacttctccgtcacggaatcaa |
7839951 |
T |
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| Q |
266 |
cgttttcagagacgaccaaaacctcaagatcggccatgaaatcggaccttcactcctacaagcaatcgaagcttctagaatctcaatcgttgtgctgtgt |
365 |
Q |
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| T |
7839950 |
cgtcttcagagacaatccaaaccttaacatcggcgacgaaatcagactttcacttctacaagcaatcgaagcttctagaatttcaatcgttgttctgtgt |
7839851 |
T |
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| Q |
366 |
aaagactatgcttcttcaacttggtgccttgatgaacttgttaagatcgttgactgtta |
424 |
Q |
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| T |
7839850 |
aaagactacgcttcttccacttggtgccttgacgaacttgttaagatcgttgactgtta |
7839792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 147 - 442
Target Start/End: Complemental strand, 7763398 - 7763103
Alignment:
| Q |
147 |
tcatcaatggcaaatcactacgaagatttcactcacgatgtttttctgagtttcagaggcggaacacgctactctttcaccgatcatctctaccgttcac |
246 |
Q |
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| T |
7763398 |
tcatcaatggcgaatcacaatgattatttcacacacgacatatttctgagtttcagaggcggaactcgctactccttcacggatcatctctatcactctc |
7763299 |
T |
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| Q |
247 |
ttctccgtcaaggaatcaacgttttcagagacgaccaaaacctcaagatcggccatgaaatcggaccttcactcctacaagcaatcgaagcttctagaat |
346 |
Q |
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| T |
7763298 |
ttctccgtcatggaatcaacgtcttcagagacgatcaaaacatcaacatcggtgatgaaatcggaacttcacttctaaaagcaattgaagcttctagaat |
7763199 |
T |
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| Q |
347 |
ctcaatcgttgtgctgtgtaaagactatgcttcttcaacttggtgccttgatgaacttgttaagatcgttgactgttatgaaaataatggaaaatc |
442 |
Q |
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| T |
7763198 |
ctcaatcgttgtgttgtgccgtgattatgcttcttccacttggtgccttgatgaactagtcaagatcgttgactgttatgacaaaaatagaaaatc |
7763103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 10 - 88
Target Start/End: Complemental strand, 7840195 - 7840117
Alignment:
| Q |
10 |
catcatcatgtagaccgtttctttgtaatcccgcattcttctgacttttgaagctccacacttcatttaaaacttaaac |
88 |
Q |
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| T |
7840195 |
catcatcatgtagaccggttcattgtgatcccgctttcttctgacttttgaagctccacacttgatttaaaactcaaac |
7840117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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