View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17415_low_1 (Length: 572)
Name: NF17415_low_1
Description: NF17415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17415_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 525; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 16 - 561
Target Start/End: Original strand, 46764851 - 46765396
Alignment:
| Q |
16 |
ttaacctcaggacagaaagagggtgatgaactaagaagaaattctgatgttatggagattcttaaaaagacaaggtttcctcgtgttcatggtgttgaca |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46764851 |
ttaacctcaggacagaaagagggtgatgaactaagaagaaattctgatgttatggagattcttaaaaagacaaggtttcctcgtgttcatggtgttgaca |
46764950 |
T |
|
| Q |
116 |
acgagaaatctcctcagacaatcctcgagcacgagtaagagtcttctcatatattcatctatgattgaagtcatgtttgaaagagtttatttgtgctcat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46764951 |
acgagaaatctcctcagacaatcctcgagcacgagtaagagtcttctcatatattcatctatgattgaagtcatgtttgaaagagtttatttgtgctcat |
46765050 |
T |
|
| Q |
216 |
ctcataatttgactatttatattagtgtttggatacatttataaaaatagtttatttccacaagatccacagaataactaatggttaattaagctcattt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46765051 |
ctcataatttgactatttatattagtgtttggatacatttataaaaatagtttatttccacaagatccacagaataactaatggttaattaagctcattt |
46765150 |
T |
|
| Q |
316 |
gaataacatattgaataagcatttaattagaatgcactctgtaacagttaagtttatgattgtcnnnnnnnctcattaagcaaaagcttttgcattttct |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
46765151 |
gaataacatattgaataagcatttaattagaatgcactctgtaacagttaagtttatgattgtctttttttctcattaagcaaaagcttttgcattttct |
46765250 |
T |
|
| Q |
416 |
cattttaaattcattactgtagtcgaattatatggcttggagatttgaattatcggatcgctctctcctaccgttctgctaaggcacttgttgagatgca |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46765251 |
cattttaaattcattactgtagtcgaattatatggcttggagatttgaattatcggatcgctctctcctaccgttctgctaaggcacttgttgagatgca |
46765350 |
T |
|
| Q |
516 |
aaactggagagcattgctagaaaatgatcaagtatgtctcgttcat |
561 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46765351 |
aaactggagagcattgctagaaaatgatcaagtatgtctcgttcat |
46765396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 80; Significance: 3e-37; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 16 - 155
Target Start/End: Original strand, 1085306 - 1085445
Alignment:
| Q |
16 |
ttaacctcaggacagaaagagggtgatgaactaagaagaaattctgatgttatggagattcttaaaaagacaaggtttcctcgtgttcatggtgttgaca |
115 |
Q |
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|||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |||||||||||| ||||| |
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| T |
1085306 |
ttaacctcaggacagaaagaaggtgatgaactaagaagaaactctgatgtattggagattcttaaaaagacaaggtttccacgtgttcatggttctgaca |
1085405 |
T |
|
| Q |
116 |
acgagaaatctcctcagacaatcctcgagcacgagtaaga |
155 |
Q |
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| ||| ||||| |||||||||| ||||| |||||||| |
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| T |
1085406 |
gtgtgaagtctccggagacaatccttgagcatgagtaaga |
1085445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 436 - 542
Target Start/End: Original strand, 1085622 - 1085728
Alignment:
| Q |
436 |
agtcgaattatatggcttggagatttgaattatcggatcgctctctcctaccgttctgctaaggcacttgttgagatgcaaaactggagagcattgctag |
535 |
Q |
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|||||||||||||||||||||||||| |||||||| || || ||| |||||||||||| ||||| ||| |||||||||||||||||||||||||| ||| |
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| T |
1085622 |
agtcgaattatatggcttggagatttaaattatcgaatagccctcaactaccgttctgcgaaggcgcttattgagatgcaaaactggagagcattgttag |
1085721 |
T |
|
| Q |
536 |
aaaatga |
542 |
Q |
| |
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| ||||| |
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|
| T |
1085722 |
agaatga |
1085728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 97
Target Start/End: Complemental strand, 38122268 - 38122223
Alignment:
| Q |
52 |
agaaattctgatgttatggagattcttaaaaagacaaggtttcctc |
97 |
Q |
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|||||||| ||||| ||||||||||| | ||||||||||||||||| |
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| T |
38122268 |
agaaattcagatgtaatggagattctcagaaagacaaggtttcctc |
38122223 |
T |
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Back To:
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