View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17415_low_3 (Length: 447)
Name: NF17415_low_3
Description: NF17415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17415_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 11 - 441
Target Start/End: Complemental strand, 2499362 - 2498932
Alignment:
| Q |
11 |
agaaaatagaaatatgcaaaaatgcaaagtagttgatagaaaaattgatattgatcaatatgtatgtgatccttcacttgttcatatttcaatgactatt |
110 |
Q |
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| T |
2499362 |
agaatatagaaatatgcaaaaatgcaaagtagttgatagaaaaattgatattgatcaatatgtatgtgatccttcacttgttcatatttcaatgactatt |
2499263 |
T |
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| Q |
111 |
gattgggattatttgagaggctctatggctgcaattcattctgttctcaaacacacttcatgtcctaagaatttgttttttcatttcattgcatcagatt |
210 |
Q |
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| T |
2499262 |
gattgggattatttgagaggctctatggctgcaattcattctgttctcaaacacacttcatgtcctaagaatttgttttttcatttcattgcatcagatt |
2499163 |
T |
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| Q |
211 |
caagattagagaataaagatgagtttactaggattgttcatggttcatttccttcattgaaattcaaagtttatgttttcaatgaaagtttagttgagaa |
310 |
Q |
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| T |
2499162 |
caagattagagaataaagatgagtttactaggattgttcatggttcatttccttcattgaaattcaaagtttatgttttcaatgaaagtttagttgagaa |
2499063 |
T |
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| Q |
311 |
tcttatttctccttcaataagacaagcacttgagaatccattgaattatgcaagaagttatcttgccgatttacttgaagaatgtgttgagagagttatc |
410 |
Q |
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| T |
2499062 |
tcttatttctccttcaataagacaagcacttgagaatccattgaattatgcaagaagttatcttgccgatttacttgaagaatgtgttgagagagttatc |
2498963 |
T |
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| Q |
411 |
tatttagattctgatgttatagttgatgatg |
441 |
Q |
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| T |
2498962 |
tatttagattctgatgttatagttgttgatg |
2498932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 11 - 441
Target Start/End: Complemental strand, 27101950 - 27101520
Alignment:
| Q |
11 |
agaaaatagaaatatgcaaaaatgcaaagtagttgatagaaaaattgatattgatcaatatgtatgtgatccttcacttgttcatatttcaatgactatt |
110 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27101950 |
agaatatagaaatatgcaaaaatgcaaagtagttgatagaaaaattgatattgatcaatatgtatgtgatccttcacttgttcatatttcaatgactatt |
27101851 |
T |
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| Q |
111 |
gattgggattatttgagaggctctatggctgcaattcattctgttctcaaacacacttcatgtcctaagaatttgttttttcatttcattgcatcagatt |
210 |
Q |
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| T |
27101850 |
gattgggattatttgagaggctctatggctgcaattcattctgttctcaaacacacttcatgtcctaagaatttgttttttcatttcattgcatcagatt |
27101751 |
T |
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| Q |
211 |
caagattagagaataaagatgagtttactaggattgttcatggttcatttccttcattgaaattcaaagtttatgttttcaatgaaagtttagttgagaa |
310 |
Q |
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| T |
27101750 |
caagattagagaataaagatgagtttactaggattgttcatggttcatttccttcattgaaattcaaagtttatgttttcaatgaaagtttagttgagaa |
27101651 |
T |
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| Q |
311 |
tcttatttctccttcaataagacaagcacttgagaatccattgaattatgcaagaagttatcttgccgatttacttgaagaatgtgttgagagagttatc |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27101650 |
tcttatttctccttcaataagacaagcacttgagaatccattgaattatgcaagaagttatcttgccgatttacttgaagaatgtgttgagagagttatc |
27101551 |
T |
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| Q |
411 |
tatttagattctgatgttatagttgatgatg |
441 |
Q |
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| T |
27101550 |
tatttagattctgatgttatagttgttgatg |
27101520 |
T |
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