View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17415_low_7 (Length: 325)
Name: NF17415_low_7
Description: NF17415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17415_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 130; Significance: 2e-67; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 178 - 307
Target Start/End: Complemental strand, 24481335 - 24481206
Alignment:
| Q |
178 |
tactactacaaacctataccccctccatatgtttatgagtctccaccatatatctataaatccccaccacccgctccctatgtttataaatctcctcctt |
277 |
Q |
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| T |
24481335 |
tactactacaaacctataccccctccatatgtttatgagtctccaccatatatctataaatccccaccacccgctccctatgtttataaatctcctcctt |
24481236 |
T |
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| Q |
278 |
acgtttacaaatccccacctacaccatata |
307 |
Q |
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| T |
24481235 |
acgtttacaaatccccacctacaccatata |
24481206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 20 - 111
Target Start/End: Complemental strand, 24481493 - 24481402
Alignment:
| Q |
20 |
agtcgccacctccaccaccatatgtctacaagtcgccgccacctcctccatatgtttacgaatcacctcctcctccacaatatgtctacaaa |
111 |
Q |
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| T |
24481493 |
agtcgccacctccaccaccatatgtctacaagtcaccgccacctcctccatatgtttacgaatcacctcctcctccacaatatgtctacaaa |
24481402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 97
Target Start/End: Complemental strand, 24481880 - 24481820
Alignment:
| Q |
37 |
ccatatgtctacaagtcgccgccacctcctccatatgtttacgaatcacctcctcctccac |
97 |
Q |
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| T |
24481880 |
ccatatgtgtacaagtcacccccacctcctccatatgtgtacaagtcaccacctcctccac |
24481820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 97
Target Start/End: Complemental strand, 24482125 - 24482054
Alignment:
| Q |
26 |
cacctccaccaccatatgtctacaagtcgccgccacctcctccatatgtttacgaatcacctcctcctccac |
97 |
Q |
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| T |
24482125 |
caccgccacctccatatgtatacaagtcacccccacctcctccatacgtgtacaagtcaccacctcctccac |
24482054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 97
Target Start/End: Complemental strand, 24481982 - 24481922
Alignment:
| Q |
37 |
ccatatgtctacaagtcgccgccacctcctccatatgtttacgaatcacctcctcctccac |
97 |
Q |
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| T |
24481982 |
ccatatgtgtacaagtcacccccacctcctccatacgtgtacaagtcaccacctcctccac |
24481922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 62
Target Start/End: Complemental strand, 41900034 - 41899998
Alignment:
| Q |
26 |
cacctccaccaccatatgtctacaagtcgccgccacc |
62 |
Q |
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| T |
41900034 |
cacctccaccaccatatgtctacaagtccccaccacc |
41899998 |
T |
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