View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17416_low_2 (Length: 412)
Name: NF17416_low_2
Description: NF17416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17416_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 382; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 18 - 407
Target Start/End: Original strand, 4994584 - 4994973
Alignment:
| Q |
18 |
ctagatgttttagattgcatcattgacatccaattttccaaaccatttaacacaccattttccaaatcattcaacacatcaattatccctttaagagcac |
117 |
Q |
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| T |
4994584 |
ctagatgttttagattgcatcattgacatccaattttccaaaccatttaacacaccattttccaaatcattcaacacatcaattatccctttaagagcac |
4994683 |
T |
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| Q |
118 |
taataaacccaccatcttccaacaatgcctcagtttcatgcacaactaatcttgacacaatacaattcccaaaataattttcattaattggtggatccaa |
217 |
Q |
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| T |
4994684 |
taataaacccaccatcttccaacaatgcctcagtttcatgcacaactaatcttgacacaatacaattcccaaaataattttcattaattggtggatccaa |
4994783 |
T |
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| Q |
218 |
gcgtgacctacaatcaacagcaaacaccaaaaatgccttattgggtttttgttggtcaactttaacccctaatgacaacaaataagcacatgtaaccgca |
317 |
Q |
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| T |
4994784 |
gcgtgacctacaatcaacagcaaaaaccaaaaatgccttattgggtttttgttggtcaactttaacccctaatgacaacaaataagcacatgtaaccgca |
4994883 |
T |
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| Q |
318 |
aaagttgaaacctttttattttcaaccttggattgtgcatatttcttaagcttttgaatatccaaaagtgataattcaaacaaacctttg |
407 |
Q |
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| T |
4994884 |
aaagttgaaacctttttattttcaaccttagattgtgcatatttcttaagcttttgaatatccaaaagtgataattcaaacaaacctttg |
4994973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 61 - 407
Target Start/End: Original strand, 4977863 - 4978214
Alignment:
| Q |
61 |
catttaacacaccattttccaaatcattcaacacatcaattatccctttaagagcactaataaacccaccatcttccaacaat-----gcctcagtttca |
155 |
Q |
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| T |
4977863 |
cattcaacacaccattttccaaaccattcaacacatcaattattccttcaagagcacatataaatccatcatctttcaacaatataatgcctcggtttca |
4977962 |
T |
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| Q |
156 |
tgcacaactaatcttgacacaatacaattcccaaaataattttcattaattggtggatccaagcgtgacctacaatcaacagcaaacaccaaaaatgcct |
255 |
Q |
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| T |
4977963 |
ctcacaaccaaccgtgacacaagacaattcccaaaataatttccattaattggtggatccaaacgtgacctactatcgatagtaaaaacaaaagctgtct |
4978062 |
T |
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| Q |
256 |
tattgggtttttgttggtcaactttaacccctaatgacaacaaataagcacatgtaaccgcaaaagttgaaacctttttattttcaaccttggattgtgc |
355 |
Q |
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| T |
4978063 |
tattagattttggtttgtcaactttaaccgctaatgccaacaaataagcacaagtaaccgcaaaagttgaaacctttttattttcaactttggattgtgc |
4978162 |
T |
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| Q |
356 |
atatttcttaagcttttgaatatccaaaagtgataattcaaacaaacctttg |
407 |
Q |
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| T |
4978163 |
atatttcttaagcttttgaatatctaaaagtgaaaattcaaacaaacctttg |
4978214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 28 - 407
Target Start/End: Original strand, 4981940 - 4982331
Alignment:
| Q |
28 |
tagattgcatcattgacatccaattttccaaaccatttaacacaccattttccaaatcattcaacacatcaattatccctttaagagcactaataaaccc |
127 |
Q |
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|||||||||| |||||||||||||| |||||||| || |||||||||||||||||| | |||||||||||| ||||||||| ||||||||||||||| || |
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| T |
4981940 |
tagattgcattattgacatccaattctccaaacccttcaacacaccattttccaaacccttcaacacatcacttatcccttcaagagcactaataaatcc |
4982039 |
T |
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| Q |
128 |
accatcttccaacaatgcctcagtttcatgcacaactaatcttgacacaatacaattcccaaaataattttcattaattggtggatccaagcgtgaccta |
227 |
Q |
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| T |
4982040 |
atcatcttttaaaaattcctcggtttcacccaaaactaattttgacacaacacaatttccaaaataatttgcattaattggtggatccaaacgtggccta |
4982139 |
T |
|
| Q |
228 |
caatcaacagcaaacaccaaaaatgccttattgggtttttgttggtcaactttaacccctaatgacaacaaataagcacatgtaaccgcaaaagttga-- |
325 |
Q |
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| T |
4982140 |
caatccacactaaaaataaaaggtaccttgttggattttggttggtcaacttttatcgtacatgccaacaaataagcacaagtaactgaaaaagttgaaa |
4982239 |
T |
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| Q |
326 |
-------aaccttttta---ttttcaaccttggattgtgcatatttcttaagcttttgaatatccaaaagtgataattcaaacaaacctttg |
407 |
Q |
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|||||| ||| ||||||| |||||||||||||| ||||||||||||||||||||||||| |||| |||| ||| | ||||||| |
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| T |
4982240 |
gcttaataaccttgttatttttttcaatcttggattgtgcatgtttcttaagcttttgaatatccaaaggtgacaattgaaaaatacctttg |
4982331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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