View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17416_low_3 (Length: 335)

Name: NF17416_low_3
Description: NF17416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17416_low_3
NF17416_low_3
[»] chr7 (14 HSPs)
chr7 (42-285)||(4704274-4704520)
chr7 (10-265)||(4714400-4714664)
chr7 (181-310)||(4834012-4834140)
chr7 (181-319)||(4700955-4701093)
chr7 (175-322)||(4788706-4788856)
chr7 (239-322)||(4705886-4705969)
chr7 (50-135)||(4788504-4788590)
chr7 (196-294)||(4715333-4715433)
chr7 (12-72)||(4833791-4833852)
chr7 (8-132)||(4700733-4700859)
chr7 (42-135)||(4705612-4705707)
chr7 (121-190)||(4788604-4788674)
chr7 (108-184)||(4833848-4833922)
chr7 (121-185)||(4705723-4705786)


Alignment Details
Target: chr7 (Bit Score: 176; Significance: 9e-95; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 42 - 285
Target Start/End: Original strand, 4704274 - 4704520
Alignment:
Q  42 tattaaagataaaatttatgagcaataattattacccagaacacatgatttgga--ttttcttagaaaaattaaacatgctaatatcttagttgtcatgc 139  Q
    |||||||||||||||||||||||||||||||||  ||||||||| |||||||||  ||||||| ||||||||||||||||||||||||| |||||| |||    
T  4704274 tattaaagataaaatttatgagcaataattattttccagaacacgtgatttggaatttttcttggaaaaattaaacatgctaatatcttcgttgtcctgc 4704373  T
Q  140 ccagtatgtggtcacaaattaaa-ataaaatggtccaaatacttttctatttaaaataagacgttttggtgctttctccatgactgttttaaatatctta 238  Q
    || ||||||||| |||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||     
T  4704374 cctgtatgtggttacaaattaaacaaaaaatgggccaaatacttttctatttaaaataagacgttttggtgctttctccgtgactgtttaaaatatcttt 4704473  T
Q  239 gataccaaaatattccaaagacttcaccaagtcttcgtcttcactcg 285  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  4704474 gataccaaaatattccaaagacttcaccaagtcttcgtcttcactcg 4704520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 10 - 265
Target Start/End: Original strand, 4714400 - 4714664
Alignment:
Q  10 aagaaaaagcttataattcagcaattttagc-ctattaaagataaaatttatgagcaataattatta------cccagaacacatgatttgga--ttttc 100  Q
    |||||||||||||||||||||||||| |||  ||||||||||||||||||||||| ||||||||| |      |||| ||||| |||||||||  |||||    
T  4714400 aagaaaaagcttataattcagcaattgtaggtctattaaagataaaatttatgagtaataattataattatttccca-aacacgtgatttggaatttttc 4714498  T
Q  101 ttagaaaaattaaacatgctaatatcttagttgtcatgcccagtatgtggtcacaaattaaaataaaatggtccaaatacttttctatttaaaataagac 200  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| | ||||||| ||||||||||||||||||||||  ||||    
T  4714499 ttagaaaaattaaacatgctaatatcttagttgtcatgccctgtatgtggtcacaatttaaca-aaaatgggccaaatacttttctatttaaaaagagac 4714597  T
Q  201 gttttggtgctttctccatgactgttttaaatat--cttagataccaaaatattccaaagacttcac 265  Q
    ||||||| ||||||||| ||||| || || || |  ||||||| |||||||||||| ||||||||||    
T  4714598 gttttggagctttctccgtgacttttatatatcttacttagatgccaaaatattcccaagacttcac 4714664  T

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Target: chr7; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 181 - 310
Target Start/End: Original strand, 4834012 - 4834140
Alignment:
Q  181 ttttctatttaaaataagacgttttggtgctttctccatgactgttttaaatatcttagataccaaaatattccaaagacttcaccaagtcttcgtcttc 280  Q
    |||||| ||||||||||||||||| || |||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  4834012 ttttctttttaaaataagacgttt-ggagctttctccatgactgttataaatatcttagatgccaaaatattctaaagacttcaccaagtcttcgtcttc 4834110  T
Q  281 actcggccatccattatatattgttcttta 310  Q
    |||||| ||| || | |||||| |||||||    
T  4834111 actcgggcatgcagtttatattcttcttta 4834140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 181 - 319
Target Start/End: Original strand, 4700955 - 4701093
Alignment:
Q  181 ttttctatttaaaataagacgttttggtgctttctccatgactgttttaaatatcttagataccaaaatattccaaagacttcaccaagtcttcgtcttc 280  Q
    |||| ||||| ||| |||||||||||| ||||||||  ||||| |||||||||||||||||  ||||||||||||||||||||||||||||||||| |||    
T  4700955 ttttttatttcaaagaagacgttttggagctttctctgtgactattttaaatatcttagatggcaaaatattccaaagacttcaccaagtcttcgtattc 4701054  T
Q  281 actcggccatccattatatattgttctttagaccatgat 319  Q
    |||||| |||||| | |||||||||||||| ||| ||||    
T  4701055 actcgggcatccactttatattgttctttacaccgtgat 4701093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 175 - 322
Target Start/End: Original strand, 4788706 - 4788856
Alignment:
Q  175 aaatacttttctatttaaaataagacgttttggtgctttctccatgactgttttaaata---tcttagataccaaaatattccaaagacttcaccaagtc 271  Q
    ||||||||||||||| |||| |||||||||||| ||||||| | |||||| ||||||||   |||| |||||||||| ||||||||||||||||||||||    
T  4788706 aaatacttttctattgaaaagaagacgttttggagctttcttcctgactgctttaaatactatcttggataccaaaacattccaaagacttcaccaagtc 4788805  T
Q  272 ttcgtcttcactcggccatccattatatattgttctttagaccatgatttt 322  Q
    |||||||||||| |  || ||| | ||| |||||||||| ||| |||||||    
T  4788806 ttcgtcttcacttgagcagccactttattttgttctttataccttgatttt 4788856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 239 - 322
Target Start/End: Original strand, 4705886 - 4705969
Alignment:
Q  239 gataccaaaatattccaaagacttcaccaagtcttcgtcttcactcggccatccattatatattgttctttagaccatgatttt 322  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||  |||||| | ||| |||| ||||| ||| |||||||    
T  4705886 gataccaaaacattccaaagacttcaccaagtcttcgtcttcactcgagcatccactttattttgtgctttataccttgatttt 4705969  T

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Target: chr7; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 50 - 135
Target Start/End: Original strand, 4788504 - 4788590
Alignment:
Q  50 ataaaatttatgagcaataattattacccagaacacatgatttggatttt-cttagaaaaattaaacatgctaatatcttagttgtc 135  Q
    ||||| || ||||||||||||||||  ||  ||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  4788504 ataaatttcatgagcaataattattttcccaaacacgtgatttggatttttcctagaaaaattaaacatgctaatatcttagttgtc 4788590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 196 - 294
Target Start/End: Original strand, 4715333 - 4715433
Alignment:
Q  196 aagacgttttggtgctttctccatgactgt--tttaaatatcttagataccaaaatattccaaagacttcaccaagtcttcgtcttcactcggccatcca 293  Q
    |||||||||||| ||||||| | ||||| |  ||||| |||||||||| ||||||| |||| |||||||||||||||||||||||| |||||  ||||||    
T  4715333 aagacgttttggagctttctgcgtgactatgctttaattatcttagatgccaaaatgttcctaagacttcaccaagtcttcgtctttactcgagcatcca 4715432  T
Q  294 t 294  Q
    |    
T  4715433 t 4715433  T

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Target: chr7; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 12 - 72
Target Start/End: Original strand, 4833791 - 4833852
Alignment:
Q  12 gaaaaagcttataattcagcaatttta-gcctattaaagataaaatttatgagcaataatta 72  Q
    ||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||||    
T  4833791 gaaaaagcttataattcagcaattttaggtctattatagataaaatttatgagcaataatta 4833852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 8 - 132
Target Start/End: Original strand, 4700733 - 4700859
Alignment:
Q  8 agaagaaaaagcttataattcagcaattttagc-ctattaaagataaaatttatgagcaataattattacccagaacacatgatttgga--ttttcttag 104  Q
    |||| ||||| ||| ||||| |||||||||||  |||||| |||||||||||||||||||||||||||  ||  ||||   ||||||||  |||||||||    
T  4700733 agaaaaaaaaacttctaatttagcaattttaggtctattatagataaaatttatgagcaataattattttcccaaacattggatttggaatttttcttag 4700832  T
Q  105 aaaaattaaacatgctaatatcttagtt 132  Q
    ||||| |||||||| |||||||||||||    
T  4700833 aaaaa-taaacatgttaatatcttagtt 4700859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 42 - 135
Target Start/End: Original strand, 4705612 - 4705707
Alignment:
Q  42 tattaaagataaaatttatgagcaataattattacccagaacacatgatttgga--ttttcttagaaaaattaaacatgctaatatcttagttgtc 135  Q
    ||||| ||||||| ||||||||||||||| |||  ||  ||||| | |||||||  ||||| ||||||||||||||||||||||||||||||||||    
T  4705612 tattatagataaagtttatgagcaataatcattttcccaaacacgtaatttggaatttttcctagaaaaattaaacatgctaatatcttagttgtc 4705707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 121 - 190
Target Start/End: Original strand, 4788604 - 4788674
Alignment:
Q  121 aatatcttagttgtcatgcccagtatgtggtcacaaattaaaataaaa-tggtccaaatacttttctattt 190  Q
    ||||||||||||||| | ||||||||||||||||||| ||||| |||| |||||| |||||||||||||||    
T  4788604 aatatcttagttgtctttcccagtatgtggtcacaaaataaaaaaaaattggtccgaatacttttctattt 4788674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 108 - 184
Target Start/End: Original strand, 4833848 - 4833922
Alignment:
Q  108 aattaaacatgctaatatcttagttgtcatgcccagtatgtggtcacaaattaaaataaaatggtccaaatactttt 184  Q
    |||||||||||||||||||| ||||||| ||||| | |||||||||||||||  || ||||||||| ||||||||||    
T  4833848 aattaaacatgctaatatctaagttgtcctgccctgaatgtggtcacaaatt--aacaaaatggtcaaaatactttt 4833922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 121 - 185
Target Start/End: Original strand, 4705723 - 4705786
Alignment:
Q  121 aatatcttagttgtcatgcccagtatgtggtcacaaattaaaataaaatggtccaaatacttttc 185  Q
    ||||||||||||||| ||||  ||||||||||||||||||| | ||| |||||||||||||||||    
T  4705723 aatatcttagttgtcttgccttgtatgtggtcacaaattaaca-aaattggtccaaatacttttc 4705786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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