View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17416_low_4 (Length: 304)
Name: NF17416_low_4
Description: NF17416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17416_low_4 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 24481228 - 24480925
Alignment:
| Q |
1 |
caaatccccacctacaccatataagccctaccaatatagttcacctccaccccctgtgtattaagcttgatgacatatgcattttgactccttccaatag |
100 |
Q |
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| T |
24481228 |
caaatccccacctacaccatataagccctaccaatatagttcacctccaccccctgtgtattaagcttgatgacatatgcattttgactccttccaatag |
24481129 |
T |
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| Q |
101 |
ttatactatgatcattgttgtgttgtttgtattgcaataaagttttcattagtaataaaagtctgctctgtaataaagctatgctttggactccatgttg |
200 |
Q |
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| T |
24481128 |
ttatactatgatcattgttgtgttgtttgtattgcaataaagttttcattagtaataaaagtctgctctgtaataaagctatgctttggactccatgttg |
24481029 |
T |
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| Q |
201 |
tatcattttgtataagtgttatttcagaagcgtattttaatctgttttatcaaatttcatatactgatatatagtttcgtatttgttgttgctaatcttg |
300 |
Q |
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| T |
24481028 |
tatcattttgtataagtgttatttcagaagcgtattttaatctgttttatcaaatttcatatactgatatatagtttcgtatttgttgttgctaatcttg |
24480929 |
T |
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| Q |
301 |
atga |
304 |
Q |
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|||| |
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| T |
24480928 |
atga |
24480925 |
T |
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