View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17417_low_1 (Length: 730)
Name: NF17417_low_1
Description: NF17417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17417_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 374 - 723
Target Start/End: Original strand, 10811959 - 10812296
Alignment:
| Q |
374 |
cttttggacgaatatgctagacattacaatcatgcatgatattgcttctaatatttgtacttggttaatttggaataactggaacagagaaatatggttc |
473 |
Q |
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| T |
10811959 |
cttttggactaata--ctagacattataatcatgcatgatattgctcctattattt----------aatttggaataactggaacagagaaatatggttc |
10812046 |
T |
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| Q |
474 |
tgccattggtgcatcaattcccatcatccttgattcactagcaacatctccaaggaaaccattgtaaaatgctttaaccttaattactatgtaaagaaaa |
573 |
Q |
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| T |
10812047 |
tgccattggtgcatcaattcccatcatccttgattcactagcaacatctccaaggaaaccattgtaaaattctttaaccttaattactatgtaaagaaaa |
10812146 |
T |
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| Q |
574 |
gatgttgcaatgtaagagaatcccaacctgtgaagcttttgtgcttgagctagatttgtgctatgttttgtacccttttcaagcgatgatcccttgtttt |
673 |
Q |
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| T |
10812147 |
gatgttgcaatgtaagagaatcccaacctgtgaagcttttgtgcttgagctagatttgtgctacgttttgtacccttttcaagcgatgatcccttatttt |
10812246 |
T |
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| Q |
674 |
tgtgttctttgaagttgctttcttcagggtagatgatgctattcttctct |
723 |
Q |
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| T |
10812247 |
tgtgttctttgaagttgctttcttcagggtagatgatgctattcttctct |
10812296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 17 - 328
Target Start/End: Original strand, 10811604 - 10811915
Alignment:
| Q |
17 |
agttttcatagtggtagaacttataaaatgaaaagttcc-tttgtacacaatgttgaacacctcaatttatttgagttgtgcaatttgctaaacacaaac |
115 |
Q |
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| T |
10811604 |
agttttcatagtggtagaacatataaaatggaaatttccctttgtacacattgttgaacacctcaatttatt-gagttgtgcaatttgctaaacacaaac |
10811702 |
T |
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| Q |
116 |
agccacaatattgaggttaaccagcttttggcnnnnnnnnnnnnnnnnngttaccaatgta-------tagcaccaaaataacactaatatatattttgg |
208 |
Q |
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| T |
10811703 |
agccacaatattgaggtgaaccagcttttggc---aacaaaataaaaaagttatcaatgtatataatatagcaccaaaatattactaat----attttgt |
10811795 |
T |
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| Q |
209 |
ttaaatattacattcaatacttcattacataaatatgtaattttactacaaaagtagggaacatttaagcaaatctgtgctaattaattactacaaaagt |
308 |
Q |
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| T |
10811796 |
ttaaatattacattcattacttcattacataaatatgtaattttacttcaaaagtagggaacatttaagcaaatctgtgctaattaattactacaaaagt |
10811895 |
T |
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| Q |
309 |
tcacctcaaatttgatacta |
328 |
Q |
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| T |
10811896 |
tcacctcaaatttgatacta |
10811915 |
T |
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