View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17417_low_2 (Length: 658)
Name: NF17417_low_2
Description: NF17417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17417_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 384; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 230 - 641
Target Start/End: Original strand, 51574737 - 51575148
Alignment:
| Q |
230 |
taacattttaattacattgatggtcaaagatacatattaagccatagcaaatatagaataaccatggcaataattattacaacgacagaaggcaaaattt |
329 |
Q |
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| T |
51574737 |
taacattttaattacattcatggtcaaagatacatattaagccatagcaaatatagaagaaccatggcaataattattactacgacagaaggcaaaattt |
51574836 |
T |
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| Q |
330 |
taaggacggaggagtgagatagtttcttacctaggaaggtgaaccatgatagttgtccgatacaccacttaaacaaggagatgaatctttacctgcaata |
429 |
Q |
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| T |
51574837 |
tatggacggaggagtgagatagtttcttacctaggaaggtgaaccatgatagtcgtccgatacaccacttaaacaaggagatgaatctttacctgcaata |
51574936 |
T |
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| Q |
430 |
atgattaacccaaactaagctttgttacttgagaaattttgtatatgtaacaacttaaagatgggttaagaaaacatgcttttcaaatgtatacattgac |
529 |
Q |
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| T |
51574937 |
atgattaacccaaactaagctttgttacttgagaaattttgtatatgtaacaacttaaagatgggttaagaaaacatgtttttcaaatgtatacattgac |
51575036 |
T |
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| Q |
530 |
tcacaaaaactcaagagagagtacataccaaaaaactgagaagcaagaagaaacggatcaggaaaactaaaatttctaggcaatggttcattcacaaaat |
629 |
Q |
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| T |
51575037 |
tcacaaaaactcaagagagagtacataccaaaaaactgagaagcaagaagagacggatcaggaaaactaaaatttctaggcaatggttcattcacaaaat |
51575136 |
T |
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| Q |
630 |
ttgagttgggtt |
641 |
Q |
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| T |
51575137 |
ttgagttgggtt |
51575148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 14 - 208
Target Start/End: Original strand, 51574519 - 51574713
Alignment:
| Q |
14 |
tactctacatgatgacacgagtatatgtagccaatcaaatgcaaaatgggataattaaaagaaaaaactaaggatgaaacatttaagagaaatctgagtt |
113 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || || |||||||| |||| |
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| T |
51574519 |
tactctacatgatgacaagagtatatgtagccaatcaaatgcaaaatgggataattaagagaaaaaactaaggatgaaactttcaacagaaatctaagtt |
51574618 |
T |
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| Q |
114 |
caatttatagttttaacaattattgatcagactttacttacgtctcgatcggattccatattactagggagccttcccttaggaaccaaagagtt |
208 |
Q |
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| T |
51574619 |
caatttatagttttaacaattcttgatcagactttacttacgtctcgatcggattccatattactagggagccttcccttaggaaccaaagagtt |
51574713 |
T |
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