View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17417_low_3 (Length: 593)
Name: NF17417_low_3
Description: NF17417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17417_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 383; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 180 - 581
Target Start/End: Original strand, 2491100 - 2491504
Alignment:
| Q |
180 |
attaggtggatcttatcatgccatgttgcttttaagatttcaatcacattttaatctaatagtgcaactcccgcgactctatcattttttactccaagcg |
279 |
Q |
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| T |
2491100 |
attaggtggatcttattatgccatgttgcttttaagatttcaatcacattttaatctaatagtgcaactcccgcgactctatcattttttactccaagcg |
2491199 |
T |
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| Q |
280 |
ttgagatttgatggagtaaatccatatttttacatttaagcaaaggttctttatgcaaaggcagctttaaacaatcatgtctaccacataaacatgttcc |
379 |
Q |
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| T |
2491200 |
ttgagatttgatggagtaaatccatatttttacatttaagcaaaggttctttatgcaaaggcagctttaaacaatcatgtctaccacataaacatgttcc |
2491299 |
T |
|
| Q |
380 |
aatggcgaaacacaacaaataacagttagtt---aagcttaaaaacacagaaattcccaatgggaattgctcttagcattttatgtctctgaactaggtc |
476 |
Q |
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| T |
2491300 |
aatggcgaaacacaacaaataacagttagttaagaagcttaaaaacacagaaactcccaatgggaattgctcttagcattttatgtctctgaactaggtc |
2491399 |
T |
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| Q |
477 |
gcatatccggggttcctttcctaattcaatttgtcttatgtttcttttgcatctgatatgtatgtagaatatattgcttaatgtaagcaccttgtaacac |
576 |
Q |
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| T |
2491400 |
gcatatccggggttcctttcctaattcaatttgtcttatgtttcttttgcatctgatatgtatgtagaatatattgcttaatgtaagcaccttgtaacac |
2491499 |
T |
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| Q |
577 |
aggtt |
581 |
Q |
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| T |
2491500 |
aggtt |
2491504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 2490911 - 2491069
Alignment:
| Q |
1 |
agagttattacccttaggcctttgaatatgcaggacttcaaaatggcaaagagtcaggtaagattactttataaccggaaaagcagtattttattatagt |
100 |
Q |
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| T |
2490911 |
agagttattacccttaggcctttgaatatgcaggacttcaaaatggcaaagagtcaggtaagattactttataaccggaaaagcagtattttattatagt |
2491010 |
T |
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| Q |
101 |
aatccggtagaattctttttctttaatctgcatttgagcctctctaatgatatgattaa |
159 |
Q |
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| T |
2491011 |
aatccggtagaattctttttctttaatctgcatttgagcctctctaatgatatgattaa |
2491069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 123 - 153
Target Start/End: Original strand, 2491066 - 2491096
Alignment:
| Q |
123 |
ttaatctgcatttgagcctctctaatgatat |
153 |
Q |
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| T |
2491066 |
ttaatctgcatttgagcctctctaatgatat |
2491096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 41589216 - 41589158
Alignment:
| Q |
1 |
agagttattacccttaggcctttgaatatgcaggacttcaaaatggcaaagagtcaggt |
59 |
Q |
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| T |
41589216 |
agagttattacccttaggccattgaatatgcaggatttcaaagaggccaagaatcaggt |
41589158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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