View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17417_low_4 (Length: 398)
Name: NF17417_low_4
Description: NF17417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17417_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 83; Significance: 3e-39; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 7 - 89
Target Start/End: Complemental strand, 38940659 - 38940577
Alignment:
| Q |
7 |
tagattatactcaaagatcatggtgaaaaattaatcatatcaagtactaaatatcaacaatcttaaacaaaaggttatgagtg |
89 |
Q |
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| T |
38940659 |
tagattatactcaaagatcatggtgaaaaattaatcatatcaagtactaaatatcaacaatcttaaacaaaaggttatgagtg |
38940577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 238 - 319
Target Start/End: Complemental strand, 38940428 - 38940347
Alignment:
| Q |
238 |
tcgattgaaacaaataatcggcaaagtgaaacaatatcagaaatagaaaccaaaatattcatacagtatatcaagtgcagac |
319 |
Q |
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| T |
38940428 |
tcgattgaaacaaataatcggcaaagtgaaacaatatcagaaatagaaaccaaaatattcatacagtatatcaagtgcagac |
38940347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 45 - 89
Target Start/End: Complemental strand, 38940772 - 38940728
Alignment:
| Q |
45 |
atcaagtactaaatatcaacaatcttaaacaaaaggttatgagtg |
89 |
Q |
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| T |
38940772 |
atcaagtactagatatcaacaatcttaaacaaaaggttatgagtg |
38940728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 45 - 83
Target Start/End: Original strand, 55759167 - 55759204
Alignment:
| Q |
45 |
atcaagtactaaatatcaacaatcttaaacaaaaggtta |
83 |
Q |
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| T |
55759167 |
atcaagtactaaatatcaacaatc-taaacaaaaggtta |
55759204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 55757710 - 55757747
Alignment:
| Q |
6 |
gtagattatactcaaagatcatggtgaaaaattaatca |
43 |
Q |
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| T |
55757710 |
gtagattatactcaaagattatggtgaaaaatcaatca |
55757747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 55757884 - 55757921
Alignment:
| Q |
6 |
gtagattatactcaaagatcatggtgaaaaattaatca |
43 |
Q |
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| T |
55757884 |
gtagattatactcaaagattatggtgaaaaatcaatca |
55757921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 55758058 - 55758095
Alignment:
| Q |
6 |
gtagattatactcaaagatcatggtgaaaaattaatca |
43 |
Q |
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| T |
55758058 |
gtagattatactcaaagattatggtgaaaaatcaatca |
55758095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 55758232 - 55758269
Alignment:
| Q |
6 |
gtagattatactcaaagatcatggtgaaaaattaatca |
43 |
Q |
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| T |
55758232 |
gtagattatactcaaagattatggtgaaaaatcaatca |
55758269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 55758406 - 55758443
Alignment:
| Q |
6 |
gtagattatactcaaagatcatggtgaaaaattaatca |
43 |
Q |
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| T |
55758406 |
gtagattatactcaaagattatggtgaaaaatcaatca |
55758443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 55758580 - 55758617
Alignment:
| Q |
6 |
gtagattatactcaaagatcatggtgaaaaattaatca |
43 |
Q |
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| T |
55758580 |
gtagattatactcaaagattatggtgaaaaatcaatca |
55758617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 55758750 - 55758787
Alignment:
| Q |
6 |
gtagattatactcaaagatcatggtgaaaaattaatca |
43 |
Q |
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|
||||||||||||||||||| |||||||||||| ||||| |
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| T |
55758750 |
gtagattatactcaaagattatggtgaaaaatcaatca |
55758787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 55759098 - 55759135
Alignment:
| Q |
6 |
gtagattatactcaaagatcatggtgaaaaattaatca |
43 |
Q |
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| T |
55759098 |
gtagattatactcaaagattatggtgaaaaatcaatca |
55759135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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