View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17417_low_5 (Length: 387)
Name: NF17417_low_5
Description: NF17417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17417_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 369
Target Start/End: Original strand, 2490432 - 2490800
Alignment:
| Q |
1 |
ccgtctgcagagaacagagaaaatatattgaggacccttttggctaaagagaaggtgcacgggggacttgattttaaggaactcgcaactatgactgaag |
100 |
Q |
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| T |
2490432 |
ccgtccgcagagaacagagaaaatatattgaggacccttttggctaaagagaaggtgcacgggggacttgattttaaggaactcgcaactatgactgaag |
2490531 |
T |
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| Q |
101 |
gatatagtggaagtgatctgaaggtttttctctattattgttttcctatggccgtaacttaactatcgtgttacaatctacaaatgcttttcttatgttt |
200 |
Q |
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| T |
2490532 |
gatatagtggaagtgatctgaaggtttttctctattattgttttcctatggccgtaacttaactatcgtgttacaatctacaaatgcttttcttatgttt |
2490631 |
T |
|
| Q |
201 |
agtttctgatgtcttaatgcattttccattttcattaattgttaaatgcagaacttatgcacaaccgctgcttatagacctgttagagagctaattcagc |
300 |
Q |
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| T |
2490632 |
agtttctgatgtcttaatgcattttccattttcattaattgttaaatgcagaacttatgcacaaccgctgcttatagacctgttagagagctaattcagc |
2490731 |
T |
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| Q |
301 |
aagagatacaaaaggattcggtaacttggcaatttctctaaagatttactataatcctattatcctatg |
369 |
Q |
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| T |
2490732 |
aagagatacaaaaggattcggtaacttggcaatttctctaaagatttactataatcctattatcctatg |
2490800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 245 - 306
Target Start/End: Complemental strand, 41589494 - 41589433
Alignment:
| Q |
245 |
aatgcagaacttatgcacaaccgctgcttatagacctgttagagagctaattcagcaagaga |
306 |
Q |
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| T |
41589494 |
aatgcagaacttgtgcacaactgctgcttatcggccagttagagagttgattcagcaagaga |
41589433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 126
Target Start/End: Original strand, 45989453 - 45989493
Alignment:
| Q |
86 |
caactatgactgaaggatatagtggaagtgatctgaaggtt |
126 |
Q |
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| T |
45989453 |
caactatgacagaaggatatagtggaagtgatcttaaggtt |
45989493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 86 - 126
Target Start/End: Original strand, 44936073 - 44936113
Alignment:
| Q |
86 |
caactatgactgaaggatatagtggaagtgatctgaaggtt |
126 |
Q |
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| T |
44936073 |
caactatgacagaaggatatagcggaagtgatcttaaggtt |
44936113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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