View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17417_low_6 (Length: 326)
Name: NF17417_low_6
Description: NF17417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17417_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 40143401 - 40143100
Alignment:
| Q |
1 |
aaaatgaagagtttaaattgccaacggaaactgatatgttttgttcctagctagctagcatagtccttgtgaaatctatctttgtctctttccggacata |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |
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| T |
40143401 |
aaaatgaagagtttaaattgccaacggaaactgatatgttttgttcctagctagc----acagtccttgtgaaatctatctttgtctctttccggacata |
40143306 |
T |
|
| Q |
101 |
ctatttacatcgattaggtcccacttacgannnnnnnn-gtcataaaaatatctcctattcacacaattcacttcccctccatatatgtgccacattctg |
199 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40143305 |
ctatttacatcgattaggtcccacttacgatttttttttgtcataaaaatatctcctattcacacaattcacttcccctccatatatgtgccacattctg |
40143206 |
T |
|
| Q |
200 |
cattatccatttattatgtgaagtctttgagaaccacgttaattagaaatggagaatgagttcgtgaaacgcagaattgatactattgctgcccactttt |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
40143205 |
cattatccatttattatgtgaagtctttgagaaccacgttaactagaaatggagaatgagttcgtgaaacgcagacttgatactattgctgcccactttg |
40143106 |
T |
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| Q |
300 |
cttcca |
305 |
Q |
| |
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|||||| |
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| T |
40143105 |
cttcca |
40143100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 281
Target Start/End: Original strand, 28174679 - 28174715
Alignment:
| Q |
245 |
gaaatggagaatgagttcgtgaaacgcagaattgata |
281 |
Q |
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|||||||||||| |||| ||||||||||||||||||| |
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| T |
28174679 |
gaaatggagaattagttggtgaaacgcagaattgata |
28174715 |
T |
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