View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17418_high_11 (Length: 294)

Name: NF17418_high_11
Description: NF17418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17418_high_11
NF17418_high_11
[»] chr6 (1 HSPs)
chr6 (15-294)||(14513308-14513587)


Alignment Details
Target: chr6 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 15 - 294
Target Start/End: Complemental strand, 14513587 - 14513308
Alignment:
Q  15 aatatccaaggtgaagaacaaaaccaatgaaaaagacacataaaccttttcattcattaatttcaagtttaagaacaagaatcttaatatcactacaata 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  14513587 aatatccaaggtgaagaacaaaaccaatgaaaaagacacataaaccttctcattgattaatttcaagtttaggaacaagaatcttaatatcactacaata 14513488  T
Q  115 tttccttcacctactcatccaaatgttgcactctcacatacaccacaatcaccaatttctcttcacaaacctcccaatttccttaacaacccaccacttt 214  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14513487 tttccttcacctactcatccaaatgttgcactctcacttacaccacaatcaccaatttctcttcacaaacctcccaatttccttaacaacccaccacttt 14513388  T
Q  215 tcttcaccatctcctcttcataaatttcatcataattctcactctatttatgccattaatccttctcaagaagtattttt 294  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  14513387 tcttcaccatctcctcttcataaatttcatcataattctcacactatttatgccattaatccttctcaagaagtattttt 14513308  T

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