View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17418_high_15 (Length: 225)
Name: NF17418_high_15
Description: NF17418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17418_high_15 |
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| [»] chr8 (2 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 2 - 225
Target Start/End: Complemental strand, 18016677 - 18016454
Alignment:
| Q |
2 |
catcaaagcaaaaaccaaaaagggattgcacgtaaaccctcatgtaaagaagcggatgtcgccacccgtcatgataacaatgagtgaacgaaacctgatt |
101 |
Q |
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|||||||||||||| | |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |
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| T |
18016677 |
catcaaagcaaaaagccaaaagggattgcacataaaccctcatgtaaagaagcggatgtcgccaccagtcatgataacaataagtgaacgaaacctgatt |
18016578 |
T |
|
| Q |
102 |
tgttttcagcctaggaaggaattcagcttaactttgtcaaggaggacgtaaggatcggaagccacattttttaagacacggttgttccgttctttccaga |
201 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||| ||||||| |
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| T |
18016577 |
tgttttcagcctaggaaggaattcaacttaactttgtcaaggaggacgtaaggatcggaagccacatttttgaagacacagttgttcctttccttccaga |
18016478 |
T |
|
| Q |
202 |
ttacacaaacacaagctagccaaa |
225 |
Q |
| |
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|||| ||||||||||||||||||| |
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| T |
18016477 |
ttacccaaacacaagctagccaaa |
18016454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 116 - 207
Target Start/End: Complemental strand, 13368446 - 13368355
Alignment:
| Q |
116 |
gaaggaattcagcttaactttgtcaaggaggacgtaaggatcggaagccacattttttaagacacggttgttccgttctttccagattacac |
207 |
Q |
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||||||||||||||||||||| ||||||| || || | ||| ||||||| || |||| |||||||||||||||| ||| ||||| ||||||| |
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| T |
13368446 |
gaaggaattcagcttaactttttcaaggatgatgtgaagatgggaagccgcacttttaaagacacggttgttcctttccttccaaattacac |
13368355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 1e-24; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 120 - 217
Target Start/End: Complemental strand, 41592758 - 41592661
Alignment:
| Q |
120 |
gaattcagcttaactttgtcaaggaggacgtaaggatcggaagccacattttttaagacacggttgttccgttctttccagattacacaaacacaagc |
217 |
Q |
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||||||||||||||||| ||||||||| | ||| ||||||||||||||||||| |||||||||||||| | ||||||||| ||||| || |||||||| |
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| T |
41592758 |
gaattcagcttaactttatcaaggagggcataatgatcggaagccacatttttgaagacacggttgtttctttctttccaaattactcatacacaagc |
41592661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 150 - 225
Target Start/End: Complemental strand, 35416039 - 35415964
Alignment:
| Q |
150 |
taaggatcggaagccacattttttaagacacggttgttccgttctttccagattacacaaacacaagctagccaaa |
225 |
Q |
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|||| |||||||||||||||||| ||||| |||||||||| |||||| | ||| | || |||||||| ||||||| |
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| T |
35416039 |
taagaatcggaagccacatttttgaagacgcggttgttcctttctttttaaattgcccacacacaagcaagccaaa |
35415964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 47 - 164
Target Start/End: Original strand, 23794102 - 23794219
Alignment:
| Q |
47 |
aaagaagcggatgtcgccacccgtcatgataacaatgagtgaacgaaacctgatttgttttcagcc-taggaaggaattcagcttaactttgtcaaggag |
145 |
Q |
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|||||||||| ||||| |||| |||||||||| | | | ||||| ||||||||||||||||| || || |||||||| ||||||||||||||||||| |
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| T |
23794102 |
aaagaagcgggtgtcgacaccagtcatgataatagtacgagaacgtaacctgatttgttttcaaccataaaaaggaattaagcttaactttgtcaaggaa |
23794201 |
T |
|
| Q |
146 |
gacgtaaggatcggaagcc |
164 |
Q |
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| |||||| |||||||||| |
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| T |
23794202 |
g-cgtaagaatcggaagcc |
23794219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 120 - 225
Target Start/End: Complemental strand, 11652834 - 11652729
Alignment:
| Q |
120 |
gaattcagcttaactttgtcaaggaggacgtaaggatcggaagccacattttttaagacacggttgttccgttctttccagattacacaaacacaagcta |
219 |
Q |
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||||| ||||||||||| |||| ||| | ||||||||||||||| ||||||||| ||||||| |||| ||||||||| ||||| || |||||||| | |
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| T |
11652834 |
gaattaagcttaactttatcaatgagagcaaaaggatcggaagccatattttttaaaacacggtcattcctttctttccaaattacccacacacaagcaa |
11652735 |
T |
|
| Q |
220 |
gccaaa |
225 |
Q |
| |
|
|||||| |
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|
| T |
11652734 |
gccaaa |
11652729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 47 - 164
Target Start/End: Original strand, 23764884 - 23765001
Alignment:
| Q |
47 |
aaagaagcggatgtcgccacccgtcatgataacaatgagtgaacgaaacctgatttgttttcagcc-taggaaggaattcagcttaactttgtcaaggag |
145 |
Q |
| |
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|||||||| | ||||| |||| |||||||||| | | | ||||| ||||||||||||||||| || || |||||||| ||||||||||||||||||| |
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| T |
23764884 |
aaagaagcaggtgtcgacaccagtcatgataatagtacgagaacgtaacctgatttgttttcaaccataaaaaggaattaagcttaactttgtcaaggaa |
23764983 |
T |
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| Q |
146 |
gacgtaaggatcggaagcc |
164 |
Q |
| |
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| |||||| |||||||||| |
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| T |
23764984 |
g-cgtaagaatcggaagcc |
23765001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 217
Target Start/End: Original strand, 41647378 - 41647467
Alignment:
| Q |
128 |
cttaactttgtcaaggaggacgtaaggatcggaagccacattttttaagacacggttgttccgttctttccagattacacaaacacaagc |
217 |
Q |
| |
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||||||||| |||||||| || |||||| |||| | ||||||||||||| |||||||||| ||| ||||| ||||| ||| ||||||| |
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| T |
41647378 |
cttaactttttcaaggagattgtgaggatcagaagtcgcattttttaagacgcggttgttcctttccttccatattacccaagcacaagc |
41647467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 225
Target Start/End: Original strand, 1797976 - 1798081
Alignment:
| Q |
120 |
gaattcagcttaactttgtcaaggaggacgtaaggatcggaagccacattttttaagacacggttgttccgttctttccagattacacaaacacaagcta |
219 |
Q |
| |
|
||||||||||||||||| |||| ||| | |||||| |||||||||||| || || |||| || |||| ||||||||| ||||| || |||||||| | |
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| T |
1797976 |
gaattcagcttaactttatcaatgagagcaaaaggattggaagccacattgttgaaaacacagtcattcctttctttccaaattacccacacacaagcaa |
1798075 |
T |
|
| Q |
220 |
gccaaa |
225 |
Q |
| |
|
|||||| |
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| T |
1798076 |
gccaaa |
1798081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 205
Target Start/End: Original strand, 34328314 - 34328399
Alignment:
| Q |
120 |
gaattcagcttaactttgtcaaggaggacgtaaggatcggaagccacattttttaagacacggttgttccgttctttccagattac |
205 |
Q |
| |
|
||||||||||||||||| ||||||||| | ||||||| |||| || |||| ||||| |||||||||| |||||| || ||||| |
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| T |
34328314 |
gaattcagcttaactttatcaaggagggcataaggattggaaacctttttttagaagacgcggttgttcctttcttttcaaattac |
34328399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 225
Target Start/End: Complemental strand, 29802626 - 29802518
Alignment:
| Q |
117 |
aaggaattcagcttaactttgtcaaggaggacgtaaggatcggaagccacattttttaagacacggttgttccgttctttccagattacacaaacacaag |
216 |
Q |
| |
|
|||||||||| ||||||||| |||| ||| |||||||||| | | ||||| ||||||||||||||||| ||| ||||| ||||| ||| ||||| |
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| T |
29802626 |
aaggaattcaacttaactttatcaatgagagtataaggatcggttgtcgtattttgtaagacacggttgttcctttccttccatattacccaagtacaag |
29802527 |
T |
|
| Q |
217 |
ctagccaaa |
225 |
Q |
| |
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| ||||||| |
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|
| T |
29802526 |
caagccaaa |
29802518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 225
Target Start/End: Complemental strand, 21141771 - 21141662
Alignment:
| Q |
116 |
gaaggaattcagcttaactttgtcaaggaggacgtaaggatcggaagccacattttttaagacacggttgttccgttctttccagattacacaaacacaa |
215 |
Q |
| |
|
||||||||| ||||||||||| |||| || | || |||||||| |||||||||| ||||| ||||||||| ||| ||||| ||| | ||||||||| |
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|
| T |
21141771 |
gaaggaatttagcttaactttttcaatgatgttgtgaggatcggttaccacatttttcaagacgcggttgttcttttccttccatattgcccaaacacaa |
21141672 |
T |
|
| Q |
216 |
gctagccaaa |
225 |
Q |
| |
|
| ||||||| |
|
|
| T |
21141671 |
tcaagccaaa |
21141662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 225
Target Start/End: Original strand, 34240830 - 34240902
Alignment:
| Q |
153 |
ggatcggaagccacattttttaagacacggttgttccgttctttccagattacacaaacacaagctagccaaa |
225 |
Q |
| |
|
|||||||||||||| ||| | |||||| ||| ||| |||||||||| ||| | || |||||||||||||||| |
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| T |
34240830 |
ggatcggaagccacgtttgtgaagacatggtcattctgttctttccaaattgcccacacacaagctagccaaa |
34240902 |
T |
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