View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17418_high_5 (Length: 380)
Name: NF17418_high_5
Description: NF17418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17418_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 13 - 365
Target Start/End: Original strand, 51313621 - 51313973
Alignment:
| Q |
13 |
aaaatgggtaacatacgtagcagaatgatgggtgaggtgtgtgatctattttgttataagaagatgtgaaggcagggaggaagtgtctttgatcatttgg |
112 |
Q |
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| T |
51313621 |
aaaatgggtaacatacgtagcagaatgatgggtgaggtgtgtgatctattttgttataagaagatgtgaaggcagggaggaagtgtctttgatcatttgg |
51313720 |
T |
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| Q |
113 |
gcaatgtgggattcttccttcctttgaagagcttgctctgggattatggggcttcaatctatgtaatagttactgatttcacaattaataatacactttc |
212 |
Q |
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| T |
51313721 |
gcaatgtgggattcttccttcctttgaagagcttgctctgggattatgggacttcaatctatgtaatagttactgatttcacaattaataatacactttc |
51313820 |
T |
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| Q |
213 |
ttcttttctataatttggttcctatcaaaaatcttgaaaatttgtaatgtaaacacatgtaacaatatatttgggaacttatgagaaatatatgtactag |
312 |
Q |
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| T |
51313821 |
ttcttttctataatttggttcctatcaaaaatcttgaaaatttgtaatgtaaacacatgtaacaatatatttgggaacttatgagaaatatatgtactag |
51313920 |
T |
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| Q |
313 |
actactttttaatgcatttgtcaacaacaaaagaagaacgacttactataaat |
365 |
Q |
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| T |
51313921 |
actactttttaatgcatttgtcaacaacaaaagaagaacgacttactataaat |
51313973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 38 - 73
Target Start/End: Complemental strand, 41574372 - 41574337
Alignment:
| Q |
38 |
tgatgggtgaggtgtgtgatctattttgttataaga |
73 |
Q |
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| T |
41574372 |
tgattggtgaggtgtgtgatctattttgttataaga |
41574337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 84
Target Start/End: Original strand, 44211366 - 44211412
Alignment:
| Q |
38 |
tgatgggtgaggtgtgtgatctattttgttataagaagatgtgaagg |
84 |
Q |
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|||| |||||||||||||||| |||||||||||||| ||||||||| |
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| T |
44211366 |
tgattggtgaggtgtgtgatcaattttgttataagagtatgtgaagg |
44211412 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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