View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17418_high_8 (Length: 354)
Name: NF17418_high_8
Description: NF17418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17418_high_8 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 150 - 354
Target Start/End: Original strand, 3641254 - 3641458
Alignment:
| Q |
150 |
gtaccaggaagaatgttattggtcgtgcattagcatgcttgagaattctgctctttataatgaatctctcatatgagagtgaggcataaatataattaag |
249 |
Q |
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| T |
3641254 |
gtaccaggaagaatgctattggtcgtgcattagcatgcttgagaattctgctctttataatgaatctctcatatgagagtgaggcataaatataattaag |
3641353 |
T |
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| Q |
250 |
ttctaaatatttatattccatccatgcaaatgatgagtatttcaattgttatattagtgtaaaaaatcgaagattaatgacatgaacttaaagaaccgat |
349 |
Q |
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| T |
3641354 |
tcctaaatatttatattccatccatgcaaatgatgagtatttcaattgttatattagtgtaaaaaatcgaagattaatgacatgaacttaaagaaccgat |
3641453 |
T |
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| Q |
350 |
tttag |
354 |
Q |
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| T |
3641454 |
tttag |
3641458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 3641104 - 3641204
Alignment:
| Q |
1 |
aggactttgatgggagctattgtagttgaagaaaaggccacgatatcacgtcacctgaagtcctgtgctttggagcgggatattcctattatggtaagta |
100 |
Q |
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| T |
3641104 |
aggactttgatgggagctattgtagttgaagaaaaggccacgatatcacgtcacctgaagtcctgtgctttggagcgggatattcctattatggtaagta |
3641203 |
T |
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| Q |
101 |
g |
101 |
Q |
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| T |
3641204 |
g |
3641204 |
T |
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