View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17418_high_9 (Length: 346)
Name: NF17418_high_9
Description: NF17418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17418_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 5375582 - 5375250
Alignment:
| Q |
1 |
ccactggtgaaggttgaacttgtaagtgtgtgcccccaaaaacaagtttagctcttggatttttcgtagtaaaaacgtagtcttttaaaacagtgcttga |
100 |
Q |
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| T |
5375582 |
ccactggtgaaggttgaacttgtaagtgtgtgcccccaaaaacaagtttagctcttggatttttcgtagtaaaaacgtagtcttttaaaacagtgcttga |
5375483 |
T |
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| Q |
101 |
tttttgacccaatgctgctgctggtagaagatgagaatcagcaattaactcttcaccatatgcttcattgtttaccaaaatcattccaactccaccagca |
200 |
Q |
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| T |
5375482 |
tttttgacccaatgctgctgctggtagaagatgagaatcagcaattaactcttcaccatatgcttcattgtttaccaaaatcattccaactccaccagca |
5375383 |
T |
|
| Q |
201 |
ttttttacaacaagacccttttcaactcttgagtttccacctctttcacatatcacaattttacctaaaacttttgaacttgttaaagaatcaggtatac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5375382 |
ttttttacaacaagacccttttcaactcttgagtttccacctctttcacatatcacaattttacctaaaacttttgaacttgttaaagaatcaggtatac |
5375283 |
T |
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| Q |
301 |
aaagatacccaactgaggattcactaacatttc |
333 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
5375282 |
aaagatacccaactgaggattcactaacatttc |
5375250 |
T |
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