View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17418_low_12 (Length: 294)

Name: NF17418_low_12
Description: NF17418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17418_low_12
NF17418_low_12
[»] chr6 (1 HSPs)
chr6 (15-294)||(14513308-14513587)


Alignment Details
Target: chr6 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 15 - 294
Target Start/End: Complemental strand, 14513587 - 14513308
Alignment:
Q  15 aatatccaaggtgaagaacaaaaccaatgaaaaagacacataaaccttttcattcattaatttcaagtttaagaacaagaatcttaatatcactacaata 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  14513587 aatatccaaggtgaagaacaaaaccaatgaaaaagacacataaaccttctcattgattaatttcaagtttaggaacaagaatcttaatatcactacaata 14513488  T
Q  115 tttccttcacctactcatccaaatgttgcactctcacatacaccacaatcaccaatttctcttcacaaacctcccaatttccttaacaacccaccacttt 214  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14513487 tttccttcacctactcatccaaatgttgcactctcacttacaccacaatcaccaatttctcttcacaaacctcccaatttccttaacaacccaccacttt 14513388  T
Q  215 tcttcaccatctcctcttcataaatttcatcataattctcactctatttatgccattaatccttctcaagaagtattttt 294  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  14513387 tcttcaccatctcctcttcataaatttcatcataattctcacactatttatgccattaatccttctcaagaagtattttt 14513308  T

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