View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17418_low_13 (Length: 290)
Name: NF17418_low_13
Description: NF17418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17418_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 23552150 - 23552427
Alignment:
| Q |
1 |
ttgatgtcgatggagaggaactacatactggaataattgcgtccatcagcaatgacaaccctgctctagttacttgtgttgatgatgtgagacttcagtt |
100 |
Q |
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| T |
23552150 |
ttgatgtcaatggagaggaaccacatactggaataattgcgtccatcagcaatgacaaccctgctctagttacttgtgttgatgatgagagacttgagtt |
23552249 |
T |
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| Q |
101 |
tcaggatggagaccttgttgtattctctgaagttcatggtatgaaagagttgaatgacagaaagccaagaaagattaaaaatgctagagcatattcattc |
200 |
Q |
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| T |
23552250 |
ttaggatggagaccttgttgtattctctgaagttcatggtatgaaagagttgaatgaccgaaagccaagaaagattaaaaatgctacagcatattcattc |
23552349 |
T |
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| Q |
201 |
actcttgaagaagacaccacaaactatggtgcctatgaaaaaggtggtattgtcacacaggccaaacaaccacaggtt |
278 |
Q |
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| T |
23552350 |
actcttgaagaagacaccacaaactatggtgcctatgaaaaaggtggtattgtcacacaggccaaacaaccacaggtt |
23552427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 30834450 - 30834173
Alignment:
| Q |
1 |
ttgatgtcgatggagaggaactacatactggaataattgcgtccatcagcaatgacaaccctgctctagttacttgtgttgatgatgtgagacttcagtt |
100 |
Q |
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| T |
30834450 |
ttgatgtcgatggagaggaaccacatactggaataattgcgtccattagcaatgacaaccctgctctagtttcttgtgttgatgatgagagacttgagtt |
30834351 |
T |
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| Q |
101 |
tcaggatggagaccttgttgtattctctgaagttcatggtatgaaagagttgaatgacagaaagccaagaaagattaaaaatgctagagcatattcattc |
200 |
Q |
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| T |
30834350 |
tcaggatggagaccttgttgtattctctgaagttcatggtatgaaagagttgaatgacggaaagccaagaaagattaaaaatgctagagcatattcattc |
30834251 |
T |
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| Q |
201 |
actcttgaagaagacaccacaaactatggtgcctatgaaaaaggtggtattgtcacacaggccaaacaaccacaggtt |
278 |
Q |
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| T |
30834250 |
actcttgaagaagacaccacaaactatggtgcctatgaaaaaggtggtattgtcacacagtccaaacaaccacaggtt |
30834173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 30815439 - 30815162
Alignment:
| Q |
1 |
ttgatgtcgatggagaggaactacatactggaataattgcgtccatcagcaatgacaaccctgctctagttacttgtgttgatgatgtgagacttcagtt |
100 |
Q |
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||||||| || || ||||||| |||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||| ||||||| |||| |
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| T |
30815439 |
ttgatgttgacggggaggaaccacatactggaataattgcatccatcagcaatgacaaccctgctgtagtatcttgtgttgatgatgagagacttgagtt |
30815340 |
T |
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| Q |
101 |
tcaggatggagaccttgttgtattctctgaagttcatggtatgaaagagttgaatgacagaaagccaagaaagattaaaaatgctagagcatattcattc |
200 |
Q |
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|||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
30815339 |
tcaggacggagaccttgttgtgttctctgaagttcatggtatgaaagagttgaatgacggaaagccaagaaagattaaaaatgctagagcatattcattc |
30815240 |
T |
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| Q |
201 |
actcttgaagaagacaccacaaactatggtgcctatgaaaaaggtggtattgtcacacaggccaaacaaccacaggtt |
278 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
30815239 |
actcttgaagaagacaccacaaactatggtgcctatgaaaaaggtggtattgtcacacaggccaaacaaccaaaggtt |
30815162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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