View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17418_low_16 (Length: 227)
Name: NF17418_low_16
Description: NF17418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17418_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 16 - 210
Target Start/End: Original strand, 6504727 - 6504921
Alignment:
| Q |
16 |
atgaatccaccacaaaagattagtcaaagagtttccaccatcaaaaccattcaagcttcttatcttcttcaatgcactttcattatcataaattccttcc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6504727 |
atgaatccaccacaaaagattagtcaaagagtttccaccatcaaaaccattcaagcttcttatcttcttcaatgcactttcattatcataaattccttcc |
6504826 |
T |
|
| Q |
116 |
aatgaatataagaatcccttccatccttctccaacaccaccttccctattcaaagcaggcaatgtccactcaacaagatctttaacataatcaac |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6504827 |
aatgaatataagaatcccttccatccttctccaacaccaccttccctattcaaagcaggcaatgtccactcaacaagatctttaacataatcaac |
6504921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 16 - 210
Target Start/End: Original strand, 6464583 - 6464774
Alignment:
| Q |
16 |
atgaatccaccacaaaagattagtcaaagagtttccaccatcaaaaccattcaagcttcttatcttcttcaatgcactttcattatcataaattccttcc |
115 |
Q |
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|||||||||||| || ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |
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| T |
6464583 |
atgaatccaccataagagattagtcaatgagtttccatcatcaaaaccattcaagcttcttatcttcttcaatccactttcattatcataaactccttcc |
6464682 |
T |
|
| Q |
116 |
aatgaatataagaatcccttccatccttctccaacaccaccttccctattcaaagcaggcaatgtccactcaacaagatctttaacataatcaac |
210 |
Q |
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|| | ||| | || || |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| || || ||| ||||||| |
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| T |
6464683 |
aaggcatagacaaaccctttccatccttctccaa---caccttccctattcaaagcaggcaatgtccactccacaagttccttcacaaaatcaac |
6464774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 16 - 119
Target Start/End: Complemental strand, 6517041 - 6516938
Alignment:
| Q |
16 |
atgaatccaccacaaaagattagtcaaagagtttccaccatcaaaaccattcaagcttcttatcttcttcaatgcactttcattatcataaattccttcc |
115 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6517041 |
atgaatccaccacaaaagattagtcaaagagtttccaccatcaaaaccattcaagcttcttatcttcttcaatgcactttcattatcataaattccttcc |
6516942 |
T |
|
| Q |
116 |
aatg |
119 |
Q |
| |
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|||| |
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|
| T |
6516941 |
aatg |
6516938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 16 - 210
Target Start/End: Complemental strand, 6473971 - 6473780
Alignment:
| Q |
16 |
atgaatccaccacaaaagattagtcaaagagtttccaccatcaaaaccattcaagcttcttatcttcttcaatgcactttcattatcataaattccttcc |
115 |
Q |
| |
|
|||||||||||| || ||||||||||| || |||||| ||||||| | |||||| ||| |||| ||||||||| |||||||||||||||||||||||| | |
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| T |
6473971 |
atgaatccaccataagagattagtcaatgaatttccatcatcaaatctattcaaactttttatattcttcaatccactttcattatcataaattccttgc |
6473872 |
T |
|
| Q |
116 |
aatgaatataagaatcccttccatccttctccaacaccaccttccctattcaaagcaggcaatgtccactcaacaagatctttaacataatcaac |
210 |
Q |
| |
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|||| ||| | || || |||||||||||| ||| ||||||||||||| |||||| ||||||||||||| ||||| || || ||||||||||| |
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| T |
6473871 |
aatgcatagacaaaacctttccatccttcttcaa---caccttccctatttaaagcaagcaatgtccactccacaagttccttcacataatcaac |
6473780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 19 - 192
Target Start/End: Complemental strand, 6462746 - 6462576
Alignment:
| Q |
19 |
aatccaccacaaaagattagtcaaagagtttccaccatcaaaaccattcaagcttcttatcttcttcaatgcactttcattatcataaattccttccaat |
118 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| ||||||| || || || ||||||| |||||||||||| |||| |||||||||||||||| || |
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| T |
6462746 |
aatccaccacaaaagattagtcaatgagtttccatcatcaaatccttttaaatttcttatattcttcaatgcagtttccttatcataaattccttgtaaa |
6462647 |
T |
|
| Q |
119 |
gaatataagaatcccttccatccttctccaacaccaccttccctattcaaagcaggcaatgtccactcaacaag |
192 |
Q |
| |
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| T |
6462646 |
gcatatacaaaccctttccatccttcttcaacacca---tctcttttcaaagcaggcaatgtccattcaacaag |
6462576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 19 - 192
Target Start/End: Original strand, 6495926 - 6496096
Alignment:
| Q |
19 |
aatccaccacaaaagattagtcaaagagtttccaccatcaaaaccattcaagcttcttatcttcttcaatgcactttcattatcataaattccttccaat |
118 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||| ||||||| || || || ||||||| |||||||||||| |||| |||||||||||||||| || |
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| T |
6495926 |
aatccaccacaagagattagtcaatgagtttccatcatcaaatccttttaaatttcttatattcttcaatgcattttccttatcataaattccttgtaag |
6496025 |
T |
|
| Q |
119 |
gaatataagaatcccttccatccttctccaacaccaccttccctattcaaagcaggcaatgtccactcaacaag |
192 |
Q |
| |
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| T |
6496026 |
gcatatacaaaccctttccatccttcttcaacacca---tctcttttcaaagcaggcaatgcccattcaacaag |
6496096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 20 - 192
Target Start/End: Original strand, 6525625 - 6525794
Alignment:
| Q |
20 |
atccaccacaaaagattagtcaaagagtttccaccatcaaaaccattcaagcttcttatcttcttcaatgcactttcattatcataaattccttccaatg |
119 |
Q |
| |
|
|||||||| || ||||||||||| ||||||||| |||||||||| ||||| |||||||||||| | ||||||||||||||||||||| |||| ||| | |
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| T |
6525625 |
atccaccataatagattagtcaatgagtttccatcatcaaaacccttcaactttcttatcttctgctgtgcactttcattatcataaatcccttgcaagg |
6525724 |
T |
|
| Q |
120 |
aatataagaatcccttccatccttctccaacaccaccttccctattcaaagcaggcaatgtccactcaacaag |
192 |
Q |
| |
|
||| | || |||||||| || ||| |||||||| ||||| || |||||||| ||||||||||| ||||| |
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|
| T |
6525725 |
cataaacaaaccccttccaaccctcttcaacacca---tccctttttaaagcaggtaatgtccactccacaag |
6525794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 17 - 210
Target Start/End: Original strand, 6456624 - 6456814
Alignment:
| Q |
17 |
tgaatccaccacaaaagattagtcaaagagtttccaccatcaaaaccattcaagcttcttatcttcttcaatgcactttcattatcataaattccttcca |
116 |
Q |
| |
|
||||||||||||||||||||| ||| ||||| ||| |||||||||| ||||| | ||||| ||| | ||| ||||||| ||||||||| | ||||||| |
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| T |
6456624 |
tgaatccaccacaaaagattactcatcgagttcccatcatcaaaacccttcaatcctcttaccttttgcaaagcactttgtttatcataagtaccttcca |
6456723 |
T |
|
| Q |
117 |
atgaatataagaatcccttccatccttctccaacaccaccttccctattcaaagcaggcaatgtccactcaacaagatctttaacataatcaac |
210 |
Q |
| |
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| ||||| || || ||||| ||||| |||| |||||| |||||||||| ||| |||||||| || ||||| || || |||||| |||| |
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|
| T |
6456724 |
tagcatatataaaacctttccacccttcaccaa---cacctttcctattcaaattaggtaatgtccattccacaagctcctttacataaccaac |
6456814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 123
Target Start/End: Complemental strand, 3754752 - 3754649
Alignment:
| Q |
20 |
atccaccacaaaagattagtcaaagagtttccaccatcaaaaccattcaagcttcttatcttcttcaatgcactttcattatcataaattccttccaatg |
119 |
Q |
| |
|
|||||||| || |||||| | || ||||||||| | ||||||| | ||| |||| ||||||||||||||| |||| |||||||||||||||| ||| | |
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| T |
3754752 |
atccaccataagagattactgaatgagtttccattagcaaaaccttccaacattctaatcttcttcaatgcattttctttatcataaattccttgcaaag |
3754653 |
T |
|
| Q |
120 |
aata |
123 |
Q |
| |
|
|||| |
|
|
| T |
3754652 |
aata |
3754649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 91
Target Start/End: Original strand, 4045482 - 4045557
Alignment:
| Q |
16 |
atgaatccaccacaaaagattagtcaaagagtttccaccatcaaaaccattcaagcttcttatcttcttcaatgca |
91 |
Q |
| |
|
|||||||||||| || | |||| | |||||||||||| |||||||||| ||||| |||| || |||||||||||| |
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|
| T |
4045482 |
atgaatccaccataacaaattactaaaagagtttccatcatcaaaacctttcaacattctaatattcttcaatgca |
4045557 |
T |
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