View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17418_low_2 (Length: 441)
Name: NF17418_low_2
Description: NF17418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17418_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 9 - 377
Target Start/End: Original strand, 7766005 - 7766373
Alignment:
| Q |
9 |
tgagatgaaacaactttgtttggcttctttcttatcagttcgttattaacccttttcagtacctagaaagacgaagcaaaaataaagcaatggatcaaca |
108 |
Q |
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| T |
7766005 |
tgagatgaaacaactttgtttgtcttctttcttatcagttcgttattaacccttttcggtacctagaaagacgaagcaaaaataaagcaatggatcaaca |
7766104 |
T |
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| Q |
109 |
aaaccatcatacaagaagattaatacctttgggagtcacacttgtaccgtggaatcatgacaacgatggtggtatcaacgaaataattttagatgctctt |
208 |
Q |
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| T |
7766105 |
aaaccatcatacaagaagattaatacctttgggagtcacacttgtaccgtggaatcatgacaacgatggtggtatcaatgaaataattttagatgctctt |
7766204 |
T |
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| Q |
209 |
gatataatggatgcttttgatttcactccagtttctatcaacgacactccatcaagaatgttcggaacaaattatgtgcaacctacttgtgatgtctttc |
308 |
Q |
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| T |
7766205 |
gatataatggatgcttttgatttcactccagtttctatcaacgacactccatcaagaatgttcggaacaaattatgtgcaacctacttgtgatgtctttc |
7766304 |
T |
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| Q |
309 |
ctgtttctgctcatgatggccgccatatttttgttgaaaacatcaatcaaattgataccggcccagtta |
377 |
Q |
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| T |
7766305 |
ctgtttctgctcatgatggccgccatatttttgttgaaaacattaatcaaattgatactggcccagtta |
7766373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 123 - 235
Target Start/End: Original strand, 7756395 - 7756510
Alignment:
| Q |
123 |
gaagattaatacctttgggagtcacacttgtaccgtggaatcatgacaa---cgatggtggtatcaacgaaataattttagatgctcttgatataatgga |
219 |
Q |
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| T |
7756395 |
gaaggttaatacctttgggagtcacacttgtaccttggaatcgtattaattacgatggtggtgtcaatgaattaatccttgatgctcttgatataatgga |
7756494 |
T |
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| Q |
220 |
tgcttttgatttcact |
235 |
Q |
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| T |
7756495 |
tgcttttggtttcact |
7756510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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