View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17418_low_3 (Length: 433)
Name: NF17418_low_3
Description: NF17418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17418_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 372; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 15 - 422
Target Start/End: Original strand, 23551829 - 23552236
Alignment:
| Q |
15 |
aataacatattctattgtagatcaattaatgaagtcatgtgagaggagcaagtttggatttacttgaccatttcattaaaacttgtccttctttggagtt |
114 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||| |
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| T |
23551829 |
aataacatattctattgtagatcatttaatgaagtcatgtgagaggagcaagtttgaatttatttgaccatttcattaaaacttgtccttctttagagtt |
23551928 |
T |
|
| Q |
115 |
gtatagtgtgtccattagtttctgacttatttgaataaatttaaatttgtttattataactgtcttataggctgttgtttttacggaagtcattcttgag |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
23551929 |
gtatagtgtgtccattagtttctgacttatttgaataaatttaaatttgtttattataactgtcttataggctgttgtttttacggaagtcagtcttgag |
23552028 |
T |
|
| Q |
215 |
aaagctgttgagttcaatgattactgccacagtcatcagcctcctattgcttttattaaaactgaagttagaggtctttttggttccgtgttttgtgatt |
314 |
Q |
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| T |
23552029 |
atagctgttgagttcaatgattactgccacagtcatcggcctcctattgcttttattaaaactgaagttagaggtctttttggttccgtgttttgtgatt |
23552128 |
T |
|
| Q |
315 |
ttgggcctgagtttactgttgttgatgtcgatggagaggaactacatactggaataattgcgtccatcagcaatgacaaccctgctctagttacttgtgt |
414 |
Q |
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||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23552129 |
ttgggcctgagtttactgttgttgatgtcaatggagaggaaccacatactggaataattgcgtccatcagcaatgacaaccctgctctagttacttgtgt |
23552228 |
T |
|
| Q |
415 |
tgatgatg |
422 |
Q |
| |
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|||||||| |
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| T |
23552229 |
tgatgatg |
23552236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 15 - 422
Target Start/End: Complemental strand, 30834772 - 30834364
Alignment:
| Q |
15 |
aataacat-attctattgtagatcaattaatgaagtcatgtgagaggagcaagtttggatttacttgaccatttcattaaaacttgtccttctttggagt |
113 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| || ||||||| |||||| | ||| |
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|
| T |
30834772 |
aataacatcattctattgtagatcaattaatgaagtcatgtaagaggagcaagtttgaatttacttgaccatttcagtagaacttgtacttcttcgtagt |
30834673 |
T |
|
| Q |
114 |
tgtatagtgtgtccattagtttctgacttatttgaataaatttaaatttgtttattataactgtcttataggctgttgtttttacggaagtcattcttga |
213 |
Q |
| |
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||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||| |||||| |
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| T |
30834672 |
tgtatagtgcgtccatttgtttctgacttatttgaataaatttaaatatgtttattataactgtcttgtaggctgttgtttttaccgaagtcagtcttga |
30834573 |
T |
|
| Q |
214 |
gaaagctgttgagttcaatgattactgccacagtcatcagcctcctattgcttttattaaaactgaagttagaggtctttttggttccgtgttttgtgat |
313 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30834572 |
gaaagctgttgagttcaatgattactgccacagtcatcagcctccaattgcttttattaaaactgaagttagaggtctttttggttccgtgttttgtgat |
30834473 |
T |
|
| Q |
314 |
tttgggcctgagtttactgttgttgatgtcgatggagaggaactacatactggaataattgcgtccatcagcaatgacaaccctgctctagttacttgtg |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |
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| T |
30834472 |
tttgggcctgagtttactgttgttgatgtcgatggagaggaaccacatactggaataattgcgtccattagcaatgacaaccctgctctagtttcttgtg |
30834373 |
T |
|
| Q |
414 |
ttgatgatg |
422 |
Q |
| |
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||||||||| |
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|
| T |
30834372 |
ttgatgatg |
30834364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 15 - 422
Target Start/End: Complemental strand, 30815760 - 30815353
Alignment:
| Q |
15 |
aataacat-attctattgtagatcaattaatgaagtcatgtgagaggagcaagtttggatttacttgaccatttcattaaaacttgtccttctttggagt |
113 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||| |||||| |||||||||||| ||| |
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| T |
30815760 |
aataacatcattctattgtagatcaattaatgaagtcatgtgagacgagcaatttta-atttacttgaccatttctgtaaaacctgtccttctttgtagt |
30815662 |
T |
|
| Q |
114 |
tgtatagtgtgtccattagtttctgacttatttgaataaatttaaatttgtttattataactgtcttataggctgttgtttttacggaagtcattcttga |
213 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||| |
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| T |
30815661 |
tgtatagtgcgtccatttgtttctgacttatttgaataaatttaaatttgtttattataactgtcttgtaggctgttgtttttaccgaagtcagtcttga |
30815562 |
T |
|
| Q |
214 |
gaaagctgttgagttcaatgattactgccacagtcatcagcctcctattgcttttattaaaactgaagttagaggtctttttggttccgtgttttgtgat |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30815561 |
gaaagctgttgagttcaatgattactgccacagtcatcagcctcctattgcttttattaaaactgaagttagaggtctttttggttccgtgttttgtgat |
30815462 |
T |
|
| Q |
314 |
tttgggcctgagtttactgttgttgatgtcgatggagaggaactacatactggaataattgcgtccatcagcaatgacaaccctgctctagttacttgtg |
413 |
Q |
| |
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||||| ||||||||||| ||||||||||| || || ||||||| |||||||||||||||||| |||||||||||||||||||||||| |||| |||||| |
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| T |
30815461 |
tttggacctgagtttacagttgttgatgttgacggggaggaaccacatactggaataattgcatccatcagcaatgacaaccctgctgtagtatcttgtg |
30815362 |
T |
|
| Q |
414 |
ttgatgatg |
422 |
Q |
| |
|
||||||||| |
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|
| T |
30815361 |
ttgatgatg |
30815353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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