View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17418_low_8 (Length: 368)
Name: NF17418_low_8
Description: NF17418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17418_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 9e-92; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 60 - 282
Target Start/End: Complemental strand, 47505168 - 47504953
Alignment:
| Q |
60 |
gtatttggtgtatcgtcaccggaaaataaataacggaaagtagttgtatcgttgtcgaaaaatacctaataagtagagaaaagttgacgttcgcatagat |
159 |
Q |
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| T |
47505168 |
gtatttggtgtatcgtcaccggaaaataaataacagaaagtagttgtatcgttgtcgaaaaatacctaataagtagaga--------cgttcgcatagat |
47505077 |
T |
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| Q |
160 |
gggcatctcgatctaaatctcaacattcaaaa-acaccaacataattaacactttaataggataggatggtcataatttctcatgtaccgttgactgcaa |
258 |
Q |
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| T |
47505076 |
gggcatctcgatctaaatctcaacattcaaaacactccaacataattaacactttaataggataggatggtcataatttctcatgtacctttgactgcaa |
47504977 |
T |
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| Q |
259 |
actgaacgaccaaataaaaatgaa |
282 |
Q |
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| T |
47504976 |
attgaacgaccaaataaaaatgaa |
47504953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 282 - 346
Target Start/End: Complemental strand, 47504557 - 47504496
Alignment:
| Q |
282 |
aaggttccaatgatatatatgttgaaaggcatttgtatatatataatgaaatgagaagtccacta |
346 |
Q |
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| T |
47504557 |
aaggttccaatgatatatatgttgaaaggaattt---tgtatataatgaaatgagaagtccacta |
47504496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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