View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17419_high_2 (Length: 207)
Name: NF17419_high_2
Description: NF17419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17419_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 154; Significance: 7e-82; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 27 - 204
Target Start/End: Complemental strand, 10688265 - 10688088
Alignment:
| Q |
27 |
tgtatggaaaatatacaaggagaataattgtgcaagtgttgtggtattggcaatttccaaagaacttgaactgaggttcttgatttggcaatttccaata |
126 |
Q |
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| T |
10688265 |
tgtatggaaaatatacaaggagaataattgtgcaagtgttgtgggattggcaatttccaaagaacttgaactgaggttcttgatttggcaatttccaata |
10688166 |
T |
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| Q |
127 |
ttcatagatccttgatcaactcactgtttctacacataggaattcatgtcagcttgaatgttctattgactttcttat |
204 |
Q |
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| T |
10688165 |
ttcatagatgcttgatcaactcattatttctagatataggaattcatgtcagcttgaatgttctattgactttcttat |
10688088 |
T |
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Target: chr2 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 5445003 - 5444799
Alignment:
| Q |
1 |
tcagaaaagttggggaatgaggaaagtgtatggaaaatatacaaggagaataattgtgcaagtgttgtggtattggcaatttccaaagaacttgaactga |
100 |
Q |
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| T |
5445003 |
tcagaaaagttggggaatgaggaaggagtatggaaaatatacacggagaataattgggcaagtgttgagggattggcaatttccaaagaacttggactga |
5444904 |
T |
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| Q |
101 |
ggtt-cttgatttggcaatttccaatattcatagatccttgatcaactcactgtttctacacataggaattcatgtcagcttgaatgttctattgacttt |
199 |
Q |
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| T |
5444903 |
ggttgagggatttggcaatttcccatattcattgatccttgatcaactcattatttctacacataggaattcatgtcagcttgaatgtcctattgacttt |
5444804 |
T |
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| Q |
200 |
cttat |
204 |
Q |
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| T |
5444803 |
cttat |
5444799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 122 - 204
Target Start/End: Original strand, 5441376 - 5441458
Alignment:
| Q |
122 |
caatattcatagatccttgatcaactcactgtttctacacataggaattcatgtcagcttgaatgttctattgactttcttat |
204 |
Q |
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| T |
5441376 |
caatattcattgatccttgatcaactcattatttctacacattggaattcatgtcagcttgaatgtcctcttgactttcttat |
5441458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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