View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17419_low_1 (Length: 244)
Name: NF17419_low_1
Description: NF17419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17419_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 104; Significance: 6e-52; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 23 - 170
Target Start/End: Original strand, 3556827 - 3556974
Alignment:
| Q |
23 |
cgagatcctttcattactttctgtaaaatctcttcttcgattcaaatgcgtgagtaaatcttggaacgctataatttgtgatcccaattttgtgaaattc |
122 |
Q |
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| T |
3556827 |
cgagatcctttcattactttctgtgaaatctctacttcgatttagatgcgtaagtaagtcttggaacgctctaatttctgatcccaattttgtgaaattc |
3556926 |
T |
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| Q |
123 |
catctcaatagatcaaaatcacaaaatcaacttttcatactagtcact |
170 |
Q |
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| T |
3556927 |
catctcaagagatcaaaatcacaaaatcaactcttcacactagtcact |
3556974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 23 - 170
Target Start/End: Complemental strand, 1687281 - 1687134
Alignment:
| Q |
23 |
cgagatcctttcattactttctgtaaaatctcttcttcgattcaaatgcgtgagtaaatcttggaacgctataatttgtgatcccaattttgtgaaattc |
122 |
Q |
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|||||||||||||||||||||||| |||||||| |||||||||| |||||| ||||| |||||||||||| |||||| ||||||| ||||||||||||| |
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| T |
1687281 |
cgagatcctttcattactttctgtgaaatctctccttcgattcagatgcgtaagtaagtcttggaacgctctaatttctgatcccttttttgtgaaattc |
1687182 |
T |
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| Q |
123 |
catctcaatagatcaaaatcacaaaatcaacttttcatactagtcact |
170 |
Q |
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| T |
1687181 |
catctcaagagatcaaaatcacaaaatcaacacctcacactagtcact |
1687134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 26 - 152
Target Start/End: Original strand, 3564848 - 3564974
Alignment:
| Q |
26 |
gatcctttcattactttctgtaaaatctcttcttcgattcaaatgcgtgagtaaatcttggaacgctataatttgtgatcccaattttgtgaaattccat |
125 |
Q |
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| T |
3564848 |
gatcctctcgttacttcctgtaaaatcacttcttcgtttcaaatgtgtaagtaatccttggaacactctcatttccgatcccaattttgtgaaattccat |
3564947 |
T |
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| Q |
126 |
ctcaatagatcaaaatcacaaaatcaa |
152 |
Q |
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| T |
3564948 |
ctcatgaaatcaaaatcacaaaatcaa |
3564974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 28 - 150
Target Start/End: Complemental strand, 3573583 - 3573461
Alignment:
| Q |
28 |
tcctttcattactttctgtaaaatctcttcttcgattcaaatgcgtgagtaaatcttggaacgctataatttgtgatcccaattttgtgaaattccatct |
127 |
Q |
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|||||||||||||| |||| ||||| |||||||| |||||||| || ||||| |||||||| || | |||| ||||||||||| |||||||| |||| |
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| T |
3573583 |
tcctttcattacttcctgtgaaatcacttcttcgtttcaaatgtgtaagtaatccttggaacactctcatttccgatcccaatttcatgaaattctatct |
3573484 |
T |
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| Q |
128 |
caatagatcaaaatcacaaaatc |
150 |
Q |
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||| | ||||||||||||||||| |
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| T |
3573483 |
caagaaatcaaaatcacaaaatc |
3573461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 150
Target Start/End: Complemental strand, 39379998 - 39379867
Alignment:
| Q |
19 |
tcaccgagatcctttcattactttctgtaaaatctcttcttcgattcaaatgcgtgagtaaatcttggaacgctataatttgtgatcccaattttgtgaa |
118 |
Q |
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|||||||||||||||| |||||| ||||||||||||| |||||||||||||| || || || ||||||| || | |||| |||||||||||||| || |
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| T |
39379998 |
tcaccgagatcctttcgttacttcctgtaaaatctctacttcgattcaaatgtgtaagcaatccttggaaaactctcatttccgatcccaattttgtcaa |
39379899 |
T |
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| Q |
119 |
attccatctcaatagatcaaaatcacaaaatc |
150 |
Q |
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||| || |||| | || |||||||| ||||| |
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| T |
39379898 |
atttcacttcaagaaattaaaatcacgaaatc |
39379867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 140
Target Start/End: Original strand, 29866408 - 29866505
Alignment:
| Q |
43 |
ctgtaaaatctcttcttcgattcaaatgcgtgagtaaatcttggaacgctataatttgtgatcccaattttgtgaaattccatctcaatagatcaaaa |
140 |
Q |
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|||| |||||| || ||||||||| |||||| || || ||||||||| | | |||| |||| ||| ||||||||||| |||||||| ||||||||| |
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| T |
29866408 |
ctgtgaaatctattattcgattcagatgcgttagcaattcttggaacattctcatttctgattccacctttgtgaaatttcatctcaagagatcaaaa |
29866505 |
T |
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