View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1741_high_18 (Length: 238)
Name: NF1741_high_18
Description: NF1741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1741_high_18 |
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Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 36403988 - 36403767
Alignment:
| Q |
1 |
taagataaatagttaacctcgtttaattttcttgatgtaattnnnnnnntaattgcatttcctaaactagcctttattttcatttaattttgtacgagta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
36403988 |
taagataaatagttaacctcgtttaattttcttgatgtaattaaaaaaataattgcatttcctacactagcctttattttcatttaattttgtacgagta |
36403889 |
T |
|
| Q |
101 |
tttgttttgttgaacgatattttgagaataatagaattaaatagggtgaagttagttaaattttatttataatttggttcatcaaatataactacttttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36403888 |
tttgttttgttgaacgatattttgagaataatagaattaaatagggtgaagttagttaaattttatttataatttggttcatcaaatataactacttttt |
36403789 |
T |
|
| Q |
201 |
tgcttatatttgagtccagagt |
222 |
Q |
| |
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||||||||||| |||| ||||| |
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| T |
36403788 |
tgcttatatttaagtcaagagt |
36403767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 80 - 144
Target Start/End: Complemental strand, 42926949 - 42926885
Alignment:
| Q |
80 |
tcatttaattttgtacgagtatttgttttgttgaacgatattttgagaataatagaattaaatag |
144 |
Q |
| |
|
||||||| |||||||| |||| |||||||||||| | ||||||||||||||||| ||||||||| |
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|
| T |
42926949 |
tcatttacttttgtacaagtacgtgttttgttgaagggtattttgagaataatagcattaaatag |
42926885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 50 - 152
Target Start/End: Original strand, 26008944 - 26009046
Alignment:
| Q |
50 |
taattgcatttcctaaactagcctttattttcatttaattttgtacgagtatttgttttgttgaacgatattttgagaataatagaattaaatagggtga |
149 |
Q |
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| T |
26008944 |
taattgcatttcctaaactactcgttcttttcatttaattttgtatgagaacttgttttattgaaggacattttgagaataatagcaataaaaagggtga |
26009043 |
T |
|
| Q |
150 |
agt |
152 |
Q |
| |
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||| |
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|
| T |
26009044 |
agt |
26009046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 51 - 222
Target Start/End: Complemental strand, 7640219 - 7640048
Alignment:
| Q |
51 |
aattgcatttcctaaactagcctttattttcatttaattttgtacgagtatttgttttgttgaacgatattttgagaataatagaattaaatagggtgaa |
150 |
Q |
| |
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||||| |||||||||| || | ||| |||| |||||||| |||| ||| | ||||| | |||| ||||||||||||||||||| ||| |||||||| | |
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| T |
7640219 |
aattgtatttcctaaattaccatttctttttatttaattatgtatgagaacttgttccgatgaaggatattttgagaataatagcattctatagggtgca |
7640120 |
T |
|
| Q |
151 |
gttagttaaattttatttataatttggttcatcaaatataactacttttttgcttatatttgagtccagagt |
222 |
Q |
| |
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|| ||||| |||||| |||| | |||| || ||||||| |||||||| |||| |||||||||| |||||| |
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|
| T |
7640119 |
gtaagttagattttacatatattctggtccaccaaatatgcctacttttctgctaatatttgagtacagagt |
7640048 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 77 - 225
Target Start/End: Complemental strand, 38788102 - 38787954
Alignment:
| Q |
77 |
ttttcatttaattttgtacgagtatttgttttgttgaacgatattttgagaataatagaattaaatagggtgaagttagttaaattttatttataatttg |
176 |
Q |
| |
|
|||| ||||||||||||| ||| | |||||| ||||| || |||||||||| ||||| || |||||| ||||||||||||| |||| ||||| ||| |
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| T |
38788102 |
tttttatttaattttgtatgaggacttgtttcattgaaggaaattttgagaacaatagtatgaaatagagtgaagttagttaggttttgcttatatttta |
38788003 |
T |
|
| Q |
177 |
gttcatcaaatataactacttttttgcttatatttgagtccagagtgat |
225 |
Q |
| |
|
|| || ||||||| ||||||||| || ||||| | ||||||||| |||| |
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| T |
38788002 |
gtccaccaaatatgactacttttctgtttatactcgagtccagactgat |
38787954 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 122 - 201
Target Start/End: Original strand, 49452129 - 49452208
Alignment:
| Q |
122 |
ttgagaataatagaattaaatagggtgaagttagttaaattttatttataatttggttcatcaaatataactactttttt |
201 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| ||| | ||||| |||||| || ||||||| |||| |||||| |
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|
| T |
49452129 |
ttgagaataatataattaaatagggtgaagttagttagattatgcttatattttggtccaccaaatattactaatttttt |
49452208 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 164
Target Start/End: Complemental strand, 26242968 - 26242854
Alignment:
| Q |
50 |
taattgcatttcctaaactagcctttattttcatttaattttgtacgagtatttgttttgttgaacgatattttgagaataatagaattaaatagggtga |
149 |
Q |
| |
|
|||||| ||||||||||| | ||||| |||||||||||| ||| | | | | |||||| ||||| |||||||||||| | ||| |||||| | ||||| |
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| T |
26242968 |
taattgtatttcctaaaccaccctttcttttcatttaatattgcatgggaacttgtttctttgaaagatattttgagagttatatcattaaagatggtga |
26242869 |
T |
|
| Q |
150 |
agttagttaaatttt |
164 |
Q |
| |
|
|||||||| ||||| |
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|
| T |
26242868 |
tgttagttagatttt |
26242854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 133
Target Start/End: Complemental strand, 8502669 - 8502551
Alignment:
| Q |
12 |
gttaacctcgtttaattttcttgatgtaattnnnnnnntaattgcatttcctaaactagcctttattttcatttaattttgtacgagtatttgttttgtt |
111 |
Q |
| |
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||||||||| ||||||||| |||||||||| |||||| |||| |||||||| |||| |||||||||| ||||||||| | | || |||| || |
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| T |
8502669 |
gttaacctcatttaattttgttgatgtaat-ataaaaataattgaattttctaaactactctttcttttcatttatttttgtacgtgaacttattttatt |
8502571 |
T |
|
| Q |
112 |
gaacgatattttgagaataata |
133 |
Q |
| |
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||| ||||||||||||||||| |
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| T |
8502570 |
gaa--atattttgagaataata |
8502551 |
T |
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