View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1741_low_1 (Length: 694)
Name: NF1741_low_1
Description: NF1741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1741_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 363; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 299 - 676
Target Start/End: Original strand, 41786026 - 41786404
Alignment:
| Q |
299 |
gatgaggatttggatagccttggggagaagaagagggaagcaataagacagctttgtttggttgttgagtttcatcgcgaccggtgtaactatctaatga |
398 |
Q |
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| T |
41786026 |
gatgaggatttggatagccttggggagaagaagagggaagcaataagacagctttgtttggttgttgagtttcatcgcgaccggtgtaactatctaatga |
41786125 |
T |
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| Q |
399 |
atttggtcgcaagtatgagagttaataagaagacatgaactttcttttttctgcttattattgtacatggagatggagtcattggaaaccaatactccta |
498 |
Q |
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| T |
41786126 |
atttggtcacaagtatgagagttaataagaagacatgaactttcttttttctgcttattattgtacatggagatggagtcattggaaaccaatactccta |
41786225 |
T |
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| Q |
499 |
agttttgtaaaattgaaaaatgattcattctattattgtttttcttactttacccctttcaatttttgattttagccagtttaaaaaatatggtggcaca |
598 |
Q |
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| T |
41786226 |
agttttgtaaaattgaaaaatgattcattctattattgtttttcttactttacccctttcaatttttgattttagccagtttaaaaaatatggtggcaca |
41786325 |
T |
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| Q |
599 |
ataggcctgattaccaaagtgataggtggatctattctcgcagaaaaaacagttagaaatgtttac-aaaagaaataca |
676 |
Q |
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| T |
41786326 |
ataggcctgattaccaaagtgataggtggatctattatcgcagaaaaaacagttagaaatgtttacaaaaagaaataca |
41786404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 5 - 256
Target Start/End: Original strand, 41785732 - 41785983
Alignment:
| Q |
5 |
gaggagcacagagagtgtgtcatgagcaatgtgtctaaaatgctttgtgaggttcagtttgcgaaggattggataaagaaaatgaacgtcgaaatgaaac |
104 |
Q |
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| T |
41785732 |
gaggaacacagagagtgtgtcatgagcaatgtgtctaaaatgctttgtgaggttcagtttgcgaaggattggataaagaaaatgaacgtcgaaatgaaac |
41785831 |
T |
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| Q |
105 |
aattgaaggaaaatgtggattgtcttacaacgctactgagcgaaaaagaagagcaggaattgttgttaagagacaaagtatggaatttagaagccacagt |
204 |
Q |
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| T |
41785832 |
aattgaaggaaaatgtggattgtcttacaacgctactgagcgaaaaagaagagcaggaattgttgttaagagacaaagtatggaatttagaagccacagt |
41785931 |
T |
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| Q |
205 |
gagcaaagaaggaggagagaaattgaacttgacaaatgcagtgagccagctt |
256 |
Q |
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| T |
41785932 |
gagcaaagaaggaggagagaaattgaacttgacaaatgcagtgagccagctt |
41785983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 10835111 - 10835178
Alignment:
| Q |
19 |
gtgtgtcatgagcaatgtgtctaaaatgctttgtgaggttcagtttgcgaaggattggataaagaaaatgaa |
90 |
Q |
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| T |
10835111 |
gtgtgtcatgagcagtgtttctaaaattct----gaggttcggtttgctaaggataggataaagaaaatgaa |
10835178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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